Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trav4-3A0A0B4J1K1 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trav4-3A0A0B4J1K1 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC15.87■□□□□ 0.13
Trav4-3A0A0B4J1K1 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trav4-3A0A0B4J1K1 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trav4-3A0A0B4J1K1 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav4-3A0A0B4J1K1 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC15.86■□□□□ 0.13
Trav4-3A0A0B4J1K1 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC15.86■□□□□ 0.13
Trav4-3A0A0B4J1K1 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav4-3A0A0B4J1K1 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trav4-3A0A0B4J1K1 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav4-3A0A0B4J1K1 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav4-3A0A0B4J1K1 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav4-3A0A0B4J1K1 Gm27322-201ENSMUST00000184007 104 ntBASIC15.85■□□□□ 0.13
Trav4-3A0A0B4J1K1 AC124392.1-201ENSMUST00000225172 5324 ntBASIC15.85■□□□□ 0.13
Trav4-3A0A0B4J1K1 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Trav4-3A0A0B4J1K1 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trav4-3A0A0B4J1K1 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trav4-3A0A0B4J1K1 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC15.83■□□□□ 0.12
Trav4-3A0A0B4J1K1 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trav4-3A0A0B4J1K1 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trav4-3A0A0B4J1K1 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trav4-3A0A0B4J1K1 Gm20634-201ENSMUST00000090779 2956 ntBASIC15.83■□□□□ 0.12
Trav4-3A0A0B4J1K1 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC15.83■□□□□ 0.12
Trav4-3A0A0B4J1K1 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Trav4-3A0A0B4J1K1 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Trav4-3A0A0B4J1K1 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trav4-3A0A0B4J1K1 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trav4-3A0A0B4J1K1 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Trav4-3A0A0B4J1K1 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trav4-3A0A0B4J1K1 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trav4-3A0A0B4J1K1 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC15.82■□□□□ 0.12
Trav4-3A0A0B4J1K1 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trav4-3A0A0B4J1K1 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trav4-3A0A0B4J1K1 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC15.81■□□□□ 0.12
Trav4-3A0A0B4J1K1 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trav4-3A0A0B4J1K1 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trav4-3A0A0B4J1K1 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trav4-3A0A0B4J1K1 Peli2-204ENSMUST00000226513 1320 ntBASIC15.8■□□□□ 0.12
Trav4-3A0A0B4J1K1 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trav4-3A0A0B4J1K1 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trav4-3A0A0B4J1K1 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trav4-3A0A0B4J1K1 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trav4-3A0A0B4J1K1 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trav4-3A0A0B4J1K1 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trav4-3A0A0B4J1K1 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Trav4-3A0A0B4J1K1 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trav4-3A0A0B4J1K1 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trav4-3A0A0B4J1K1 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trav4-3A0A0B4J1K1 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.11
Trav4-3A0A0B4J1K1 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 Gm17082-201ENSMUST00000166043 1091 ntBASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Trav4-3A0A0B4J1K1 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Trav4-3A0A0B4J1K1 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Trav4-3A0A0B4J1K1 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trav4-3A0A0B4J1K1 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trav4-3A0A0B4J1K1 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trav4-3A0A0B4J1K1 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trav4-3A0A0B4J1K1 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC15.74■□□□□ 0.11
Trav4-3A0A0B4J1K1 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trav4-3A0A0B4J1K1 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trav4-3A0A0B4J1K1 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trav4-3A0A0B4J1K1 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC15.74■□□□□ 0.11
Trav4-3A0A0B4J1K1 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trav4-3A0A0B4J1K1 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trav4-3A0A0B4J1K1 Gm42699-201ENSMUST00000198104 1657 ntBASIC15.73■□□□□ 0.11
Trav4-3A0A0B4J1K1 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Trav4-3A0A0B4J1K1 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trav4-3A0A0B4J1K1 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trav4-3A0A0B4J1K1 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms