Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL008636.1-201ENST00000625038 1018 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 MIR4275-201ENST00000636486 87 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AC008725.1-201ENST00000605123 2263 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 CEP170P1-201ENST00000502249 4587 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 DDX10P1-201ENST00000448545 1933 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 SPRR2C-201ENST00000290702 219 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 Y_RNA.88-201ENST00000363029 99 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 Y_RNA.159-201ENST00000363674 87 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 Y_RNA.409-201ENST00000383990 98 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AL109755.1-201ENST00000401791 649 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 CYP4F29P-201ENST00000420685 446 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 OR4C10P-201ENST00000434991 931 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 HMGB3P12-201ENST00000438745 556 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 RPS3AP50-201ENST00000487064 803 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 FAM92A1P2-202ENST00000504766 877 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC108043.1-201ENST00000512696 574 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 DEFB108D-201ENST00000527787 222 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC118273.2-201ENST00000532092 465 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AL121603.1-201ENST00000553815 142 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 SNORD84-203ENST00000584275 78 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC098848.2-201ENST00000588023 330 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC020910.2-201ENST00000603635 610 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AL136363.1-201ENST00000605349 337 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 FRG1KP-201ENST00000623592 341 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC019226.1-201ENST00000625666 515 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIMCH1Q9UPQ0 AL365440.1-201ENST00000436135 2167 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 CR848007.1-201ENST00000442354 1699 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 XIAPP3-201ENST00000312918 795 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 HSPE1P11-201ENST00000339579 310 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 SNORD56.2-201ENST00000363242 71 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 RPS4XP8-201ENST00000402039 771 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 RN7SKP177-201ENST00000410567 355 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 MTCO1P20-201ENST00000425366 358 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AL662791.1-201ENST00000441992 928 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC016696.1-201ENST00000446949 318 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AP000926.1-201ENST00000479573 241 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 RPL36AP51-201ENST00000487216 318 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 RN7SL323P-201ENST00000494712 295 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 CEACAMP10-202ENST00000495431 496 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC104383.1-201ENST00000530297 370 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AK6P1-201ENST00000540219 478 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC128657.1-201ENST00000549459 145 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC126177.3-201ENST00000551839 688 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 HMGB1P6-201ENST00000569046 646 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 OR4K8P-201ENST00000578842 1048 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC005255.1-201ENST00000593748 216 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AP000907.4-201ENST00000604143 237 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AC103710.2-201ENST00000609912 942 ntBASIC4.38□□□□□ -1.71
LIMCH1Q9UPQ0 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms