Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC108747.1-201ENST00000609508 535 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AF117829.1-206ENST00000621883 3802 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 Z69908.1-201ENST00000622603 247 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 SNORA36C-201ENST00000384289 132 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 MIR493-201ENST00000385254 89 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 U3.42-201ENST00000408746 214 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 RNA5SP44-201ENST00000410446 133 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 RN7SKP159-201ENST00000410657 292 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 RPL27AP8-201ENST00000424277 446 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 UBE2D3P2-201ENST00000424409 445 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AC092641.1-201ENST00000440229 772 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AC009961.3-201ENST00000449832 765 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 RPL21P13-201ENST00000488305 481 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 RPS15AP36-201ENST00000492022 382 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AL359273.1-201ENST00000510918 627 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AP005205.1-201ENST00000563503 508 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AP005136.1-201ENST00000579765 429 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 ZNF415P1-201ENST00000582279 1166 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AC040904.1-201ENST00000590850 223 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AC112191.3-201ENST00000604371 277 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AL359999.1-201ENST00000604513 294 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AC138749.5-201ENST00000611461 208 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AC116165.2-201ENST00000616705 206 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AC010149.2-201ENST00000637608 315 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 AL161912.2-201ENST00000565707 3007 ntBASIC3.6□□□□□ -1.83
LIMA1Q9UHB6 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 U3.6-201ENST00000363622 211 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AL359837.1-201ENST00000381357 287 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 SNORD116-1-201ENST00000384335 95 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 RAB9AP3-201ENST00000412737 573 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC073063.1-201ENST00000434352 607 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 RPL21P23-201ENST00000446654 460 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 RAB9AP1-201ENST00000449393 573 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 SNRPFP4-201ENST00000456366 242 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 RNU6-840P-201ENST00000517275 65 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AP001804.3-201ENST00000525146 880 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC037471.2-201ENST00000564941 598 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AP001981.2-201ENST00000603241 418 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC068276.1-201ENST00000605793 379 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC245008.1-201ENST00000608123 476 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC239868.4-201ENST00000608318 671 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AL391813.2-201ENST00000609113 322 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AP000254.1-201ENST00000609934 520 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AL158063.1-201ENST00000615349 536 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 AC092140.2-201ENST00000618027 521 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 U6.98-201ENST00000637157 84 ntBASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
LIMA1Q9UHB6 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.59□□□□□ -1.84
LIMA1Q9UHB6 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.59□□□□□ -1.84
LIMA1Q9UHB6 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
LIMA1Q9UHB6 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.84
LIMA1Q9UHB6 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
LIMA1Q9UHB6 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
LIMA1Q9UHB6 SDAD1P2-201ENST00000441308 2028 ntBASIC3.58□□□□□ -1.84
LIMA1Q9UHB6 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms