Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 MIR208A-201ENST00000362287 71 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 RNA5SP322-201ENST00000363617 119 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 RNY3P3-201ENST00000363816 102 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 PTMAP2-201ENST00000397627 327 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 RPL7P60-201ENST00000397636 735 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 HSPE1P26-201ENST00000405341 275 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 RNA5SP118-201ENST00000410385 109 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 OR51A5P-201ENST00000415429 942 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 CRYBB2P1-203ENST00000415709 538 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AC119618.1-201ENST00000434191 222 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 RPL7P54-201ENST00000438336 674 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 ELOCP23-201ENST00000452014 332 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AC104308.1-201ENST00000454621 333 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 RN7SL542P-201ENST00000467147 294 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 UBE2CP3-201ENST00000502715 450 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 RNU1-45P-201ENST00000517191 141 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AC022616.3-201ENST00000523940 148 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AC024224.1-201ENST00000538284 609 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 MIR5684-201ENST00000585074 65 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AC068790.3-201ENST00000602988 553 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 MIR432-201ENST00000606207 94 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AC064801.1-201ENST00000612025 407 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 AL356585.4-201ENST00000623078 1229 ntBASIC4.13□□□□□ -1.75
DKK3Q9UBP4 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.13□□□□□ -1.75
DKK3Q9UBP4 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 OTUD4P1-201ENST00000237841 3067 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 SNORA31-201ENST00000362607 130 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 Y_RNA.61-201ENST00000362835 102 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 SNORD56.2-201ENST00000363242 71 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 Y_RNA.160-201ENST00000363677 92 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 RNY1P12-201ENST00000364251 105 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 RNU6-456P-201ENST00000384493 107 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 MIR483-201ENST00000385070 76 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 RNU6-1009P-201ENST00000390996 107 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 HSPE1P12-201ENST00000412576 301 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC006548.1-201ENST00000427470 102 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC137499.1-201ENST00000427602 88 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 FDX1P2-201ENST00000450769 375 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 BX276092.4-201ENST00000452056 248 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC022364.2-201ENST00000457963 554 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 SNORD121B-201ENST00000458838 81 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC018710.1-201ENST00000506509 158 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC090572.1-201ENST00000519251 160 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AL117336.2-201ENST00000602435 335 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 Y_RNA.804-201ENST00000615262 101 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 CR381572.1-201ENST00000625098 102 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 MAPK10-253ENST00000641010 4072 ntBASIC4.12□□□□□ -1.75
DKK3Q9UBP4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
DKK3Q9UBP4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
DKK3Q9UBP4 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.11□□□□□ -1.75
DKK3Q9UBP4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
DKK3Q9UBP4 AL133383.2-201ENST00000622958 2336 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 AC007256.1-201ENST00000392253 2765 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
DKK3Q9UBP4 CKAP2P1-201ENST00000555477 2049 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 RLIMP1-201ENST00000339626 1680 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 Y_RNA.279-201ENST00000364763 95 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 RNU1-89P-201ENST00000384592 164 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 RPL21P65-201ENST00000406094 466 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 AL356776.1-201ENST00000406574 447 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 RNU2-15P-201ENST00000410692 191 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 MRPL50P2-201ENST00000416821 482 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 AL117339.2-201ENST00000430475 180 ntBASIC4.11□□□□□ -1.75
DKK3Q9UBP4 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.11□□□□□ -1.75
DKK3Q9UBP4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.11□□□□□ -1.75
DKK3Q9UBP4 SEPT14P3-201ENST00000439401 183 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms