Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MTND4P8-201ENST00000514997 1362 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 RNU6-40P-201ENST00000384254 107 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 RPP40P1-201ENST00000426762 456 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 RNA5SP310-201ENST00000459084 116 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 RPL23AP63-201ENST00000498752 471 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 APOOP1-201ENST00000604695 592 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 AL158801.5-201ENST00000623123 465 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 AC083865.1-201ENST00000636634 831 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 AC007342.9-201ENST00000623877 1385 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
SCN3AQ9NY46 ZNF734P-201ENST00000419494 1534 ntBASIC1.7□□□□□ -2.14
SCN3AQ9NY46 AL356292.1-201ENST00000283110 373 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 RNU6-76P-201ENST00000384060 104 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 MIR1294-201ENST00000408503 142 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 RNU2-17P-201ENST00000410290 190 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 MORF4L1P7-201ENST00000426038 703 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AC092798.1-201ENST00000458542 409 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 snoU13.23-201ENST00000458863 104 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 MTCO3P42-201ENST00000509488 518 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 MTCO3P39-201ENST00000514812 518 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 RNU6-991P-201ENST00000516168 107 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AC055876.5-201ENST00000605667 259 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AL360181.4-201ENST00000621752 134 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AL353748.2-201ENST00000622148 471 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 HSPA8P4-201ENST00000511877 1920 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 ZNF355P-201ENST00000427301 3216 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 Y_RNA.595-201ENST00000410403 105 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AL603825.1-201ENST00000438481 80 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AC009237.8-201ENST00000445492 379 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 RNU7-26P-201ENST00000458980 63 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AC091917.2-201ENST00000505002 744 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 RNA5SP458-201ENST00000516188 119 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 Y_RNA.676-201ENST00000516393 96 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 RNU6-548P-201ENST00000517083 115 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AC008676.3-201ENST00000521237 435 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.69□□□□□ -2.14
SCN3AQ9NY46 U73023.1-201ENST00000603134 700 ntBASIC1.69□□□□□ -2.14
SCN3AQ9NY46 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AC008669.1-201ENST00000565823 2178 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 RNU6-1159P-201ENST00000362933 107 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 RPL7P54-201ENST00000438336 674 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 RNF2P1-201ENST00000442955 1010 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 HMGN2P23-201ENST00000456759 269 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 RN7SKP210-201ENST00000459176 261 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AC015724.1-201ENST00000478577 156 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 RPL23AP70-201ENST00000483361 460 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 UBE2Q2P9-201ENST00000490086 202 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 MTND3P24-201ENST00000506306 329 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 ERHP1-201ENST00000523006 310 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 OR5AK1P-201ENST00000524837 922 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AP003385.6-201ENST00000531603 374 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 VN1R9P-201ENST00000614184 867 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AC093536.2-201ENST00000565257 1406 ntBASIC1.68□□□□□ -2.14
SCN3AQ9NY46 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
SCN3AQ9NY46 AC111188.2-201ENST00000529697 1387 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms