Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 NOL8P1-201ENST00000508336 3529 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 Z82217.1-201ENST00000625157 8149 ntBASIC4.21□□□□□ -1.73
TDP1Q9NUW8 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
TDP1Q9NUW8 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 RPL7P26-201ENST00000333817 754 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 RNU6-188P-201ENST00000364207 107 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 SNORA62.1-201ENST00000364287 154 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 SNORA23-201ENST00000365128 182 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 U3.15-201ENST00000365398 212 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 RNU6-629P-201ENST00000384061 103 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 RNA5SP118-201ENST00000410385 109 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 PPP1R11P2-201ENST00000423543 382 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AL121871.1-201ENST00000443413 436 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 GAPDHP27-201ENST00000447427 1020 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 RPS11P1-201ENST00000451072 473 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 MRPS17P3-201ENST00000465453 385 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 GMFBP1-201ENST00000467831 427 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AC008628.2-201ENST00000502605 298 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 DEFB109D-201ENST00000529497 240 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 RPL23AP87-202ENST00000573039 466 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AP001029.3-201ENST00000588063 596 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AC063943.3-201ENST00000615562 356 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 MIR7702-201ENST00000621931 59 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AL354798.1-201ENST00000622505 329 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 FRG1KP-201ENST00000623592 341 ntBASIC4.21□□□□□ -1.74
TDP1Q9NUW8 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.21□□□□□ -1.74
TDP1Q9NUW8 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 RNU6-1279P-201ENST00000383917 103 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 RNU6-1074P-201ENST00000383995 104 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 RNU6-213P-201ENST00000384051 104 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 RNA5SP372-201ENST00000390836 115 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AL136116.1-201ENST00000403591 381 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AL359634.1-202ENST00000404721 284 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 RPS23P10-201ENST00000416185 486 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 MTCYBP8-201ENST00000422855 651 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 TBCAP1-201ENST00000436520 327 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 USP9YP8-201ENST00000441913 500 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC073415.1-201ENST00000449240 153 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 RPS29P15-201ENST00000458329 171 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 RPS20P20-201ENST00000460498 340 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC010631.1-201ENST00000474150 156 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC139783.2-201ENST00000504847 1145 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC105417.1-201ENST00000514691 285 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 RNU6-1092P-201ENST00000516955 87 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 CENPUP1-201ENST00000526649 1202 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 ADI1P3-201ENST00000549509 470 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 MIR4775-201ENST00000581168 75 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AF038458.1-201ENST00000588406 262 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AL022099.1-201ENST00000604551 712 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 BNIP3P10-201ENST00000605360 577 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC009994.1-201ENST00000606889 253 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC233309.1-201ENST00000619522 751 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 AC006504.8-201ENST00000621046 635 ntBASIC4.2□□□□□ -1.74
TDP1Q9NUW8 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 289.9 ms