Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 SNORD113-8-201ENST00000363497 74 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 RNU6-595P-201ENST00000363944 107 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 RNU6-1325P-201ENST00000364905 105 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 RNU6-45P-201ENST00000384471 107 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 Y_RNA.533-201ENST00000384596 114 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 RPS16P5-201ENST00000406501 404 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AL354868.1-201ENST00000417077 482 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AL353691.1-201ENST00000451332 387 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 RN7SL197P-201ENST00000466981 299 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 FPGT-203ENST00000467578 601 ntTSL 2 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 IGHVII-62-1-201ENST00000519283 235 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 ERHP1-201ENST00000523006 310 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC011487.3-201ENST00000593607 453 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AL359881.1-201ENST00000602916 267 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC012119.1-201ENST00000603184 222 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC008814.1-201ENST00000603797 406 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AP005432.2-201ENST00000608162 586 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC097372.5-201ENST00000623665 376 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 U6.92-201ENST00000636464 89 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AP001148.1-201ENST00000624124 2359 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 INTS6P1-201ENST00000504674 2530 ntBASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX2-3Q8TAU0 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 RNU1-32P-201ENST00000363937 159 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 RNVU1-6-201ENST00000364688 164 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 RNA5SP87-201ENST00000384155 118 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 MTCYBP2-201ENST00000407745 171 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 Y_RNA.602-201ENST00000410535 92 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AC234779.1-201ENST00000425910 285 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 RPL36P19-201ENST00000430744 301 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 RPL12P17-201ENST00000432393 498 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AL159987.2-201ENST00000432754 307 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AC073063.1-201ENST00000434352 607 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 PIGFP3-201ENST00000441918 722 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AC091153.1-201ENST00000466297 402 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AC135721.1-201ENST00000497954 479 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 RNA5SP170-201ENST00000517150 101 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 MIR5696-201ENST00000578474 85 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AL161637.1-201ENST00000622380 412 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 AC007998.5-201ENST00000622938 237 ntBASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NKX2-3Q8TAU0 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
NKX2-3Q8TAU0 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC6.22□□□□□ -1.41
NKX2-3Q8TAU0 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
NKX2-3Q8TAU0 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.22□□□□□ -1.41
NKX2-3Q8TAU0 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.22□□□□□ -1.41
NKX2-3Q8TAU0 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
NKX2-3Q8TAU0 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms