Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC025627.2-201ENST00000576220 160 ntBASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 AC091167.4-201ENST00000605079 184 ntBASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 Z84480.1-201ENST00000605131 311 ntBASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 AL136363.1-201ENST00000605349 337 ntBASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 AC004067.1-201ENST00000608733 700 ntBASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 MIR7154-201ENST00000620673 73 ntBASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 AC019226.1-201ENST00000625666 515 ntBASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 MIR6715B-201ENST00000637172 77 ntBASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SMC1BQ8NDV3 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC244517.1-201ENST00000606030 2086 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 Y_RNA.89-201ENST00000363031 102 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 SNORA38.1-201ENST00000364172 131 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 RNU6-483P-201ENST00000384088 108 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 RNU6-301P-201ENST00000384277 107 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 SNORA48.5-201ENST00000391143 135 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 RNA5SP120-201ENST00000410900 112 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 OR4K11P-201ENST00000431829 904 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 NEK4P1-201ENST00000433383 879 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 HMGB1P31-201ENST00000437242 427 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 RPL7P54-201ENST00000438336 674 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC108022.1-201ENST00000493466 478 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC074344.1-201ENST00000512823 224 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC090572.1-201ENST00000519251 160 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC090281.1-201ENST00000523019 276 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 OR4R1P-201ENST00000529879 463 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AL133153.1-201ENST00000557756 303 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 RPL23AP97-201ENST00000568955 471 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC098848.2-201ENST00000588023 330 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 SLC25A36P1-201ENST00000590111 465 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AL162413.1-201ENST00000603198 110 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC010680.3-201ENST00000604215 520 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC007621.1-201ENST00000604544 437 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC008536.2-201ENST00000607284 349 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AL450472.3-201ENST00000615578 367 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC005609.4-201ENST00000625071 447 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 AC058791.1-201ENST00000608412 3198 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 MTND5P3-201ENST00000438536 1800 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 Z73965.1-201ENST00000623412 2297 ntBASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.74□□□□□ -1.65
SMC1BQ8NDV3 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 RNU6-1249P-201ENST00000363237 111 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 U3.11-201ENST00000364476 212 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 RNU5E-4P-201ENST00000364931 120 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 RNU6-637P-201ENST00000384050 107 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 U1.1-201ENST00000384101 164 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 MIR490-201ENST00000384865 128 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 RPL23AP48-201ENST00000406913 488 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 RNA5SP104-201ENST00000410989 118 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AL139413.1-201ENST00000421309 217 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AL353193.1-201ENST00000421444 268 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 BEND7P1-201ENST00000422058 457 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AC108145.1-201ENST00000503770 153 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 RNA5SP154-201ENST00000516193 111 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 SCARNA14-201ENST00000516903 136 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 RNU4-60P-201ENST00000517239 135 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AC069240.1-201ENST00000548774 375 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 MIR5187-201ENST00000583479 76 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 NRBF2P5-201ENST00000603087 788 ntBASIC4.73□□□□□ -1.65
SMC1BQ8NDV3 AL357078.3-201ENST00000607528 618 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms