Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 CYCSP32-201ENST00000440548 321 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 RNU7-136P-201ENST00000458819 69 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AC104563.1-201ENST00000476147 376 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AC103975.1-201ENST00000482506 483 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AC108729.1-201ENST00000487812 947 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 MTCYBP17-201ENST00000503579 789 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AC098799.2-201ENST00000509466 868 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 MTND2P32-201ENST00000521584 1038 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AC005832.3-201ENST00000537929 631 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 GLYCAM1-201ENST00000546596 285 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 OR6C7P-201ENST00000547875 934 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AC087465.1-201ENST00000560574 245 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AL049838.1-201ENST00000563647 981 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AC009237.15-201ENST00000610252 501 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AL603758.1-201ENST00000618654 241 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AL590084.1-201ENST00000407885 387 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 RNA5SP344-201ENST00000411081 104 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 VN1R51P-201ENST00000411675 945 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 HMGN2P35-201ENST00000412164 270 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 MTCO2P8-201ENST00000412213 658 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 HSFY4P-201ENST00000415994 1181 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 TIMM9P2-201ENST00000419324 266 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 OR10R1P-201ENST00000441524 1141 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 ATP5C1P1-201ENST00000441945 895 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 RPS12P18-201ENST00000442381 270 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AL009048.1-201ENST00000450437 298 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 RPS29P2-201ENST00000479278 136 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AP004217.1-201ENST00000480579 346 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 SUMO2P5-201ENST00000506790 245 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC118942.1-201ENST00000529674 1035 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC138761.3-201ENST00000579993 334 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 MIR3200-201ENST00000580767 85 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 OR1M4P-201ENST00000589199 287 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC103710.4-201ENST00000609301 899 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC008993.2-201ENST00000631744 806 ntBASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
ZNF540Q8NDQ6 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 NDUFB4P4-201ENST00000404822 243 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 RNU2-33P-201ENST00000410344 192 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AC068533.2-201ENST00000411872 306 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 MTND1P21-201ENST00000412991 285 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 GTF2IP20-201ENST00000431663 360 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 Z80107.1-201ENST00000436830 412 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 RPL31P50-201ENST00000471002 296 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 LARP1BP2-201ENST00000486594 519 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 MRPS36P2-201ENST00000512569 299 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 SNORA19.3-201ENST00000516165 130 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 IGKV2-26-201ENST00000518305 343 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AC109329.2-201ENST00000519658 482 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AL391261.3-201ENST00000557194 520 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AL132657.2-201ENST00000564417 358 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 MTND1P8-201ENST00000571424 950 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AC011471.1-201ENST00000585766 187 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AC012119.1-201ENST00000603184 222 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AC021749.1-201ENST00000604322 607 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AC024060.1-201ENST00000607052 494 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AC008498.1-201ENST00000613012 531 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AL157817.1-201ENST00000614264 790 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 AL137003.2-201ENST00000606924 2538 ntBASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.88□□□□□ -1.95
ZNF540Q8NDQ6 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZNF540Q8NDQ6 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms