Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MIR22-201ENST00000362190 85 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 RNU6-1214P-201ENST00000363650 109 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 RNU6-359P-201ENST00000365466 108 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 SNORA70.4-201ENST00000365509 134 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 RPL21P75-201ENST00000396599 483 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 RPL21P28-201ENST00000401418 483 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AL592114.1-201ENST00000403842 483 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 OR4K11P-201ENST00000431829 904 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 RPL21P39-201ENST00000463605 483 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC008571.1-201ENST00000467232 300 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 RPL23AP11-201ENST00000475260 469 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 RPL21P93-201ENST00000480465 489 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC233702.1-201ENST00000482905 502 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC021382.1-201ENST00000483523 359 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC087190.1-201ENST00000484462 480 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AP001025.2-201ENST00000490908 477 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC093591.1-201ENST00000491435 481 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 RPL7P23-201ENST00000493874 747 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 RPL21P16-201ENST00000495531 483 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC093809.1-201ENST00000509155 340 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 HSPE1P23-201ENST00000509838 286 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC022483.1-201ENST00000514020 567 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 RN7SKP57-201ENST00000517248 293 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC103783.1-201ENST00000520506 373 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 MTATP6P24-201ENST00000576835 677 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC012493.2-201ENST00000595083 291 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 AC106900.2-201ENST00000604994 317 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 RNU6-88P-201ENST00000606801 100 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 AL356596.1-201ENST00000624230 379 ntBASIC2.67□□□□□ -1.98
SKA3Q8IX90 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
SKA3Q8IX90 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC009487.2-201ENST00000420969 6821 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 Z82195.2-201ENST00000612348 18351 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 RNA5SP387-201ENST00000364226 106 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 RNU6-723P-201ENST00000383973 107 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 MIR320C1-201ENST00000408566 88 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 RN7SKP220-201ENST00000410611 288 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 RPL21P32-201ENST00000419877 477 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 MTATP6P4-201ENST00000427725 675 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC006946.1-201ENST00000429106 328 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 RSU1P2-202ENST00000437884 485 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AL354941.1-201ENST00000438600 464 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 MTCO1P27-201ENST00000448269 226 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 AL109741.2-201ENST00000455561 343 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC034159.1-201ENST00000513885 583 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 AP003497.1-201ENST00000528472 562 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 AP001429.1-201ENST00000602568 530 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AL158211.4-201ENST00000606988 584 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC024560.3-201ENST00000608482 349 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC087683.2-201ENST00000611384 326 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AL450472.3-201ENST00000615578 367 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC021755.4-201ENST00000616620 456 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
SKA3Q8IX90 AC008443.7-201ENST00000622195 246 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 AL513185.3-201ENST00000433335 1300 ntBASIC2.66□□□□□ -1.98
SKA3Q8IX90 ZNF807-201ENST00000328088 1707 ntBASIC2.65□□□□□ -1.98
SKA3Q8IX90 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
SKA3Q8IX90 AP000526.1-201ENST00000603308 1388 ntBASIC2.65□□□□□ -1.98
SKA3Q8IX90 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
SKA3Q8IX90 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
SKA3Q8IX90 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
SKA3Q8IX90 RNU6-433P-201ENST00000363216 104 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 RNU6-853P-201ENST00000364306 107 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 SNORA54-201ENST00000384281 123 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 RNU6-253P-201ENST00000384730 105 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 MIR493-201ENST00000385254 89 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 U3.42-201ENST00000408746 214 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 RNA5SP274-201ENST00000410484 108 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 RPL19P1-201ENST00000411635 428 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.65□□□□□ -1.99
SKA3Q8IX90 UBE2D3P2-201ENST00000424409 445 ntBASIC2.65□□□□□ -1.99
SKA3Q8IX90 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms