Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 BNIP3P30-201ENST00000601184 574 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC013553.2-201ENST00000604244 589 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 SUMO2P15-201ENST00000604285 278 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC008945.2-201ENST00000606056 604 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 DISC2.1-201ENST00000612827 205 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC024940.5-201ENST00000622889 474 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 OR56B2P-202ENST00000641377 2453 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC090740.1-201ENST00000623193 2262 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RIOK3P1-201ENST00000418778 1528 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-552P-201ENST00000362869 119 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-288P-201ENST00000363690 104 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-741P-201ENST00000383889 107 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AL391361.1-201ENST00000405580 489 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AL354719.1-201ENST00000406535 843 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 USP9YP6-201ENST00000413550 854 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 CHEK2P3-201ENST00000416118 248 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AL161631.1-201ENST00000417933 486 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 BX842559.1-201ENST00000419615 532 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 YPEL5P1-201ENST00000419731 367 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 ATP5JP1-201ENST00000431631 322 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AL591212.2-201ENST00000433923 257 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AL627308.1-201ENST00000435693 821 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RPL23AP89-201ENST00000439324 255 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC009237.8-201ENST00000445492 379 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 OR1H1P-201ENST00000448731 937 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC004801.2-202ENST00000463559 283 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC097484.1-201ENST00000471148 389 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC006517.1-201ENST00000480485 328 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RN7SL97P-201ENST00000486780 299 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AP001086.1-201ENST00000494882 321 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 SNRPCP2-201ENST00000504370 475 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC092436.1-201ENST00000506450 503 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-123P-201ENST00000516163 102 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 Y_RNA.689-201ENST00000516589 107 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 SNORD60.2-201ENST00000516883 86 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-685P-201ENST00000517088 95 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RNA5SP291-201ENST00000517222 105 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 RANP9-201ENST00000519957 271 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 MAL2-208ENST00000523307 556 ntTSL 4 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 PHBP17-201ENST00000528576 541 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AP005435.4-201ENST00000529514 284 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 TVP23CP2-201ENST00000571473 623 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC008521.1-201ENST00000587471 187 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC012531.5-201ENST00000611375 151 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AL110115.1-201ENST00000614396 364 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 MIR6826-201ENST00000617808 98 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC006065.6-201ENST00000625201 545 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC093536.2-201ENST00000565257 1406 ntBASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC28AQ8IWP9 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-451P-201ENST00000362921 107 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-903P-201ENST00000391270 109 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AL136116.1-201ENST00000403591 381 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 HSPE1P8-201ENST00000406997 288 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RNU4-46P-201ENST00000410818 138 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms