Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AL355812.1-201ENST00000603215 216 ntBASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 AL034351.1-201ENST00000605288 668 ntBASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 AC006329.2-201ENST00000611491 394 ntBASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 AP001282.2-201ENST00000616149 309 ntBASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 MIR6758-201ENST00000620653 63 ntBASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 IQCB2P-201ENST00000401788 1633 ntBASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 AC073136.1-201ENST00000449426 2884 ntBASIC5.92□□□□□ -1.46
SH3RF1Q7Z6J0 EOGT-210ENST00000615922 1931 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AC010329.2-201ENST00000595195 2737 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 RNU1-76P-201ENST00000362903 159 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 Y_RNA.84-201ENST00000363011 104 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 Y_RNA.237-201ENST00000364439 102 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 RNA5SP505-201ENST00000364748 108 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 SNORA62-201ENST00000365493 153 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 SNORA69.1-201ENST00000390904 137 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 SNORD58.1-201ENST00000391313 66 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 RPS15AP40-201ENST00000419621 391 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 HMGN2P27-201ENST00000427352 270 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AC022133.1-201ENST00000490961 571 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 ENPP7P11-201ENST00000505915 627 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 SNORA70.11-201ENST00000515987 138 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 SNORA70.13-201ENST00000516116 138 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AC109329.1-201ENST00000518744 317 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 BX284668.6-201ENST00000606899 438 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 DDX18P3-201ENST00000404856 2007 ntBASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SH3RF1Q7Z6J0 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 AC027287.1-201ENST00000553115 1453 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 RNA5SP455-201ENST00000365190 119 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 SNORD73A-201ENST00000386062 65 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 NDUFB4P10-201ENST00000452541 359 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 snoU109.4-201ENST00000458953 143 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 NDUFB4P9-201ENST00000511646 388 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 AC006427.1-201ENST00000514359 712 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 IGKV2-23-201ENST00000518729 323 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 AMZ2P1-203ENST00000565833 850 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 AC007619.2-201ENST00000605743 379 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 FP236240.3-201ENST00000623061 327 ntBASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC5.9□□□□□ -1.46
SH3RF1Q7Z6J0 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
SH3RF1Q7Z6J0 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
SH3RF1Q7Z6J0 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.47
SH3RF1Q7Z6J0 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SH3RF1Q7Z6J0 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.9□□□□□ -1.47
SH3RF1Q7Z6J0 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
SH3RF1Q7Z6J0 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
SH3RF1Q7Z6J0 AC092747.4-201ENST00000620519 1861 ntBASIC5.9□□□□□ -1.47
SH3RF1Q7Z6J0 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 Y_RNA.105-201ENST00000363182 111 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 RNU6-700P-201ENST00000391043 107 ntBASIC5.89□□□□□ -1.47
SH3RF1Q7Z6J0 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms