Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AL356057.2-201ENST00000403318 432 ntBASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 AP000567.1-201ENST00000406413 156 ntBASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 EBAG9P1-201ENST00000418955 543 ntBASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 ELOCP10-201ENST00000440624 327 ntBASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 SUMO2P6-201ENST00000505273 288 ntBASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 ELOCP34-201ENST00000604436 327 ntBASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 AC018754.1-201ENST00000607486 925 ntBASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 MIR6788-201ENST00000618842 66 ntBASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
CSPG4Q6UVK1 MTND4P1-201ENST00000457501 1466 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 AC234781.2-201ENST00000426370 994 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 AC104308.1-201ENST00000454621 333 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 AC098583.1-201ENST00000480875 255 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 AC090453.1-201ENST00000495560 436 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 AC012493.3-201ENST00000604494 112 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 MIR6078-201ENST00000611069 100 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 SNHG22-203ENST00000617833 660 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 DDX43P2-201ENST00000604753 1354 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 RPL31P2-201ENST00000413849 377 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 MTND2P16-201ENST00000419987 799 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 RPS3AP44-201ENST00000425466 790 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 XKRYP6-201ENST00000440468 1116 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 XKRYP3-201ENST00000442113 1116 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 KATNBL1P4-201ENST00000503545 918 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 MIR1273G-201ENST00000577677 100 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 AC068944.2-201ENST00000610373 403 ntBASIC1.21□□□□□ -2.22
CSPG4Q6UVK1 AP002907.1-201ENST00000606361 1430 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 RNA5SP27-201ENST00000363839 119 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 RNA5SP139-201ENST00000364340 117 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 AC092447.6-201ENST00000414578 210 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 AL445687.1-201ENST00000439946 251 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 OR10R1P-201ENST00000441524 1141 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 DUXAP8-207ENST00000456786 622 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 HMGN1P8-201ENST00000463578 288 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 MTCYBP18-201ENST00000501056 747 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 AC008885.2-201ENST00000509506 930 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 NIFKP8-201ENST00000560500 874 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 AL590095.2-201ENST00000604136 117 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 AL590099.1-201ENST00000615276 138 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 AC022513.1-201ENST00000624512 117 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 SNORA16.1-201ENST00000364597 132 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 RNU1-133P-201ENST00000364867 167 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 MTND2P2-201ENST00000434633 945 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 THAP5P1-201ENST00000439089 262 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 OR51B8P-201ENST00000449892 769 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 OR4K8P-201ENST00000578842 1048 ntBASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.2□□□□□ -2.22
CSPG4Q6UVK1 AL136164.4-201ENST00000625013 2135 ntBASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 U8.1-201ENST00000362843 134 ntBASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 RNU1-139P-201ENST00000391307 165 ntBASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 SSXP9-201ENST00000417503 292 ntBASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 AC139103.1-201ENST00000534696 1030 ntBASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 NOP56P3-201ENST00000549457 385 ntBASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 TEX21P-201ENST00000447107 1476 ntBASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CSPG4Q6UVK1 MTND4P34-201ENST00000572715 1371 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 MIR144-201ENST00000384886 86 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 RNA5SP492-201ENST00000411330 114 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 RPS12P24-201ENST00000412619 387 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 HMGN2P20-201ENST00000437531 273 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AP004242.1-201ENST00000533701 349 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC103810.8-201ENST00000607347 118 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC104307.1-201ENST00000616142 196 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 uc_338.12-201ENST00000616344 181 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC109780.2-201ENST00000413467 845 ntBASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.18□□□□□ -2.22
CSPG4Q6UVK1 FABP5P3-201ENST00000437960 408 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms