Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 OR4P1P-201ENST00000530808 1136 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 MIR4738-201ENST00000579134 87 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 MIR3158-1-201ENST00000583596 81 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC104458.1-201ENST00000608243 463 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC004067.1-201ENST00000608733 700 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 uc_338.32-201ENST00000615087 172 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AL365440.1-201ENST00000436135 2167 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 USP8P1-201ENST00000494673 3183 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AC004925.1-201ENST00000624256 2706 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 FRG1BP-201ENST00000278882 761 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 RNA5SP42-201ENST00000364278 115 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 RNU5E-4P-201ENST00000364931 120 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 RNU2-15P-201ENST00000410692 191 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 RNU4-55P-201ENST00000410731 137 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 RPL30P16-201ENST00000419341 429 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 USP9YP36-201ENST00000424581 829 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AC006989.1-201ENST00000427212 131 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AL451074.3-201ENST00000437709 472 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 SDCBPP1-201ENST00000440192 890 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 MTCO3P18-201ENST00000440206 761 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 RPS29P31-201ENST00000446147 164 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 HMGB1P15-201ENST00000453854 435 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 RBM43P1-201ENST00000476891 1081 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 FAM92A1P2-202ENST00000504766 877 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AC114967.1-201ENST00000504890 259 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 HMGN1P11-201ENST00000508668 303 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AC010493.1-201ENST00000513479 292 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AC022616.6-201ENST00000520479 119 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AL121603.1-201ENST00000553815 142 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AC055876.5-201ENST00000605667 259 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AL590282.1-201ENST00000610379 1136 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AC006133.1-201ENST00000617106 264 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AL732618.1-201ENST00000623251 301 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 RPS4XP5-202ENST00000449995 1334 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 AP001350.1-201ENST00000601906 1524 ntBASIC4.34□□□□□ -1.71
VPS53Q5VIR6 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
VPS53Q5VIR6 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 RNY4P14-201ENST00000363656 96 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 CALM2P3-201ENST00000400429 449 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 RN7SKP27-201ENST00000410684 333 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC069157.1-201ENST00000421749 137 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 ISCA1P6-201ENST00000427740 390 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 DPPA2P1-201ENST00000428060 556 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AP1S2P1-201ENST00000457344 379 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC092451.1-201ENST00000480211 153 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 RNU6-27P-201ENST00000516146 107 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC109635.4-202ENST00000531666 412 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC009101.1-201ENST00000568135 242 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 MIR3922-201ENST00000585192 84 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC011816.2-201ENST00000607089 556 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 OR10AB1P-201ENST00000609613 938 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC009159.1-201ENST00000618386 642 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AL596245.1-201ENST00000618994 362 ntBASIC4.33□□□□□ -1.72
VPS53Q5VIR6 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 AC010149.2-201ENST00000637608 315 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms