Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX4Q06945 AC096745.1-201ENST00000509945 370 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 AC016065.2-201ENST00000514530 444 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 RN7SKP92-201ENST00000517266 244 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 RAB9BP1-201ENST00000519581 626 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 IGLVIV-53-201ENST00000520107 367 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX4Q06945 AC100870.1-201ENST00000522035 505 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX4Q06945 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.06□□□□□ -1.6
SOX4Q06945 CYCSP40-201ENST00000575927 294 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 MIR5096-201ENST00000583713 70 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 AC078899.3-201ENST00000599065 212 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 AC006254.3-201ENST00000603353 884 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 AC123768.4-201ENST00000616244 701 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 AC141273.2-201ENST00000618989 130 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 AC015967.1-201ENST00000619893 476 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX4Q06945 AL031119.1-201ENST00000404707 1879 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
SOX4Q06945 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SOX4Q06945 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SOX4Q06945 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SOX4Q06945 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.06□□□□□ -1.6
SOX4Q06945 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
SOX4Q06945 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SOX4Q06945 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SOX4Q06945 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SOX4Q06945 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SOX4Q06945 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SOX4Q06945 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.05□□□□□ -1.6
SOX4Q06945 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
SOX4Q06945 Y_RNA.350-201ENST00000365409 98 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 RNU6-637P-201ENST00000384050 107 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 RNU11-4P-201ENST00000391149 133 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 U3.35-201ENST00000408405 208 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 RNA5SP111-201ENST00000411386 101 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5.05□□□□□ -1.6
SOX4Q06945 UBE2FP1-201ENST00000416536 447 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 PGBD4P6-201ENST00000421501 610 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 AC068287.1-201ENST00000430283 295 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC5.05□□□□□ -1.6
SOX4Q06945 EEF1A1P1-201ENST00000447052 739 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 AC243772.1-201ENST00000451620 410 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 CYCSP34-201ENST00000458172 304 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 RPS23P3-201ENST00000470993 430 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SOX4Q06945 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC5.05□□□□□ -1.6
SOX4Q06945 DEFB109F-201ENST00000491870 277 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 AC026979.1-201ENST00000492525 396 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 CYCSP27-201ENST00000527643 293 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC5.05□□□□□ -1.6
SOX4Q06945 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.05□□□□□ -1.6
SOX4Q06945 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.05□□□□□ -1.6
SOX4Q06945 HMGB3P26-201ENST00000560051 582 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 MIR4715-201ENST00000584117 79 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 Z98751.3-201ENST00000604447 521 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 IGHV3-29-201ENST00000604817 344 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 AL158032.1-201ENST00000605401 106 ntBASIC5.05□□□□□ -1.6
SOX4Q06945 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SOX4Q06945 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.05□□□□□ -1.6
SOX4Q06945 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SOX4Q06945 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SOX4Q06945 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SOX4Q06945 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.04□□□□□ -1.6
SOX4Q06945 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
SOX4Q06945 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX4Q06945 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 MAPK10-263ENST00000641052 4307 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 RNU6-1059P-201ENST00000363752 98 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 Y_RNA.461-201ENST00000384263 103 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 SNORD51-201ENST00000384320 80 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 RPL21P1-201ENST00000399532 476 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX4Q06945 AC096664.2-201ENST00000411843 406 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 DNAJC19P7-201ENST00000428811 344 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 AC016712.1-201ENST00000431088 378 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX4Q06945 AL359672.1-201ENST00000442302 409 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 NOTCH2P1-201ENST00000443481 624 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 AL591623.2-201ENST00000449978 222 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX4Q06945 snoU13.1-201ENST00000459157 104 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.04□□□□□ -1.6
SOX4Q06945 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX4Q06945 AP000889.1-201ENST00000530968 660 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 AP001781.1-201ENST00000530977 207 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 AC091516.1-201ENST00000549191 703 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 SETP7-201ENST00000552169 453 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 SULT1C2P2-201ENST00000562517 294 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.04□□□□□ -1.6
SOX4Q06945 MIR4660-201ENST00000583549 74 ntBASIC5.04□□□□□ -1.6
SOX4Q06945 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SOX4Q06945 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms