Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AL356218.2-201ENST00000605264 187 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AC103710.3-201ENST00000608157 948 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AC092807.2-201ENST00000609367 243 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AC114781.5-201ENST00000615297 108 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 uc_338.11-201ENST00000619132 160 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 MIR6130-201ENST00000619419 109 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HOXA4Q00056 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA4Q00056 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
HOXA4Q00056 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA4Q00056 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA4Q00056 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA4Q00056 Z82217.1-201ENST00000625157 8149 ntBASIC3.65□□□□□ -1.82
HOXA4Q00056 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA4Q00056 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA4Q00056 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA4Q00056 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA4Q00056 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA4Q00056 AC093535.2-201ENST00000624769 2326 ntBASIC3.65□□□□□ -1.82
HOXA4Q00056 XIAPP3-201ENST00000312918 795 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 RNA5SP307-201ENST00000362863 116 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 RNU1-132P-201ENST00000364300 164 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 U3.12-201ENST00000364498 214 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 SNORA23-201ENST00000365128 182 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA4Q00056 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.83
HOXA4Q00056 RNU6-1227P-201ENST00000383981 107 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AL356967.1-201ENST00000406305 431 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 RNA5SP36-201ENST00000410197 133 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AC009237.10-201ENST00000414112 510 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA4Q00056 AC005534.2-201ENST00000431047 433 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AC090774.1-201ENST00000435925 246 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA4Q00056 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA4Q00056 RN7SL432P-201ENST00000484057 298 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA4Q00056 AC083829.1-201ENST00000503756 657 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AC117522.3-201ENST00000507974 584 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AC026801.2-201ENST00000515352 425 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 RNU6-390P-201ENST00000516259 103 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 RNA5SP519-201ENST00000516480 119 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA4Q00056 AC008489.1-201ENST00000524271 483 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AL137161.1-201ENST00000532231 390 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.65□□□□□ -1.83
HOXA4Q00056 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA4Q00056 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA4Q00056 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA4Q00056 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA4Q00056 XIAPP1-201ENST00000603162 600 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 LLPHP1-201ENST00000603571 367 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AL022099.1-201ENST00000604551 712 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AC113403.1-201ENST00000604910 193 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.65□□□□□ -1.83
HOXA4Q00056 DUSP12P1-201ENST00000612874 516 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA4Q00056 AC140113.4-201ENST00000622087 222 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 MIR6810-201ENST00000622701 70 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 AC008013.2-202ENST00000637965 364 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA4Q00056 AL645937.1-201ENST00000641739 1652 ntBASIC3.65□□□□□ -1.83
HOXA4Q00056 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
HOXA4Q00056 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA4Q00056 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA4Q00056 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA4Q00056 AL139811.1-201ENST00000424779 2299 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA4Q00056 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
HOXA4Q00056 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA4Q00056 AC083843.3-201ENST00000623679 2186 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
HOXA4Q00056 MIR3065-201ENST00000390137 79 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 SDHCP2-201ENST00000398565 501 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 RN7SKP140-201ENST00000411196 284 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA4Q00056 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA4Q00056 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA4Q00056 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA4Q00056 RPL23AP25-201ENST00000430973 463 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 KCTD9P3-201ENST00000434597 1169 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA4Q00056 CYCSP43-201ENST00000438233 310 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 RNU7-66P-201ENST00000459469 62 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 RNU6-1208P-201ENST00000459588 107 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 RPL21P93-201ENST00000480465 489 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AC012158.1-204ENST00000483430 465 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA4Q00056 VN1R105P-201ENST00000486595 910 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 RPL23AP55-201ENST00000498163 452 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AC108145.1-201ENST00000503770 153 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA4Q00056 AC098591.2-201ENST00000510152 315 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXA4Q00056 RNU4-60P-201ENST00000517239 135 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 HMGB1P19-201ENST00000517578 577 ntBASIC3.64□□□□□ -1.83
HOXA4Q00056 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA4Q00056 AP001804.3-201ENST00000525146 880 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms