Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.65□□□□□ -1.67
RNF4P78317 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.65□□□□□ -1.67
RNF4P78317 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.65□□□□□ -1.67
RNF4P78317 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.65□□□□□ -1.67
RNF4P78317 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
RNF4P78317 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
RNF4P78317 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
RNF4P78317 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
RNF4P78317 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.67
RNF4P78317 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
RNF4P78317 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC4.65□□□□□ -1.67
RNF4P78317 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
RNF4P78317 ASNSP1-201ENST00000518311 1939 ntBASIC4.64□□□□□ -1.67
RNF4P78317 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
RNF4P78317 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
RNF4P78317 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
RNF4P78317 Y_RNA.2-201ENST00000362330 96 ntBASIC4.64□□□□□ -1.67
RNF4P78317 RN7SKP95-201ENST00000362860 303 ntBASIC4.64□□□□□ -1.67
RNF4P78317 RNU6-214P-201ENST00000384130 107 ntBASIC4.64□□□□□ -1.67
RNF4P78317 SNORA70.10-201ENST00000384515 134 ntBASIC4.64□□□□□ -1.67
RNF4P78317 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
RNF4P78317 RNU6-837P-201ENST00000391056 108 ntBASIC4.64□□□□□ -1.67
RNF4P78317 RNU6-817P-201ENST00000391083 104 ntBASIC4.64□□□□□ -1.67
RNF4P78317 U3.32-201ENST00000408116 212 ntBASIC4.64□□□□□ -1.67
RNF4P78317 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.64□□□□□ -1.67
RNF4P78317 Z99755.1-201ENST00000414048 380 ntBASIC4.64□□□□□ -1.67
RNF4P78317 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
RNF4P78317 AC008267.5-201ENST00000424928 265 ntBASIC4.64□□□□□ -1.67
RNF4P78317 AC096644.2-201ENST00000429278 159 ntBASIC4.64□□□□□ -1.67
RNF4P78317 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.64□□□□□ -1.67
RNF4P78317 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.64□□□□□ -1.67
RNF4P78317 RPS27P18-201ENST00000431701 247 ntBASIC4.64□□□□□ -1.67
RNF4P78317 NRBF2P3-201ENST00000432731 865 ntBASIC4.64□□□□□ -1.67
RNF4P78317 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.64□□□□□ -1.67
RNF4P78317 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.64□□□□□ -1.67
RNF4P78317 DHFRP3-201ENST00000455595 559 ntBASIC4.64□□□□□ -1.67
RNF4P78317 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.64□□□□□ -1.67
RNF4P78317 AC084198.1-201ENST00000477747 402 ntBASIC4.64□□□□□ -1.67
RNF4P78317 CEACAMP10-202ENST00000495431 496 ntBASIC4.64□□□□□ -1.67
RNF4P78317 ENPP7P11-201ENST00000505915 627 ntBASIC4.64□□□□□ -1.67
RNF4P78317 AC022493.2-201ENST00000506122 481 ntBASIC4.64□□□□□ -1.67
RNF4P78317 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.64□□□□□ -1.67
RNF4P78317 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.64□□□□□ -1.67
RNF4P78317 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.64□□□□□ -1.67
RNF4P78317 AC012339.2-201ENST00000523996 453 ntBASIC4.64□□□□□ -1.67
RNF4P78317 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.64□□□□□ -1.67
RNF4P78317 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.64□□□□□ -1.67
RNF4P78317 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
RNF4P78317 AC011494.1-201ENST00000596454 237 ntBASIC4.64□□□□□ -1.67
RNF4P78317 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.64□□□□□ -1.67
RNF4P78317 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.64□□□□□ -1.67
RNF4P78317 Z69720.2-201ENST00000624755 279 ntBASIC4.64□□□□□ -1.67
RNF4P78317 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
RNF4P78317 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
RNF4P78317 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
RNF4P78317 AC090971.4-201ENST00000560291 1800 ntBASIC4.64□□□□□ -1.67
RNF4P78317 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.64□□□□□ -1.67
RNF4P78317 AC139769.1-204ENST00000472297 1931 ntBASIC4.64□□□□□ -1.67
RNF4P78317 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
RNF4P78317 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
RNF4P78317 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
RNF4P78317 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
RNF4P78317 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
RNF4P78317 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
RNF4P78317 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.63□□□□□ -1.67
RNF4P78317 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
RNF4P78317 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
RNF4P78317 RNU6-76P-201ENST00000384060 104 ntBASIC4.63□□□□□ -1.67
RNF4P78317 SNORA51.8-201ENST00000384234 132 ntBASIC4.63□□□□□ -1.67
RNF4P78317 RPL21P90-201ENST00000415692 466 ntBASIC4.63□□□□□ -1.67
RNF4P78317 AF186996.5-201ENST00000418098 904 ntBASIC4.63□□□□□ -1.67
RNF4P78317 BX842559.1-201ENST00000419615 532 ntBASIC4.63□□□□□ -1.67
RNF4P78317 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.63□□□□□ -1.67
RNF4P78317 USMG5P1-201ENST00000425964 177 ntBASIC4.63□□□□□ -1.67
RNF4P78317 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.63□□□□□ -1.67
RNF4P78317 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.63□□□□□ -1.67
RNF4P78317 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.63□□□□□ -1.67
RNF4P78317 AL450023.3-201ENST00000440592 271 ntBASIC4.63□□□□□ -1.67
RNF4P78317 AL731563.1-201ENST00000442202 214 ntBASIC4.63□□□□□ -1.67
RNF4P78317 AL359073.1-201ENST00000448036 403 ntBASIC4.63□□□□□ -1.67
RNF4P78317 RPL21P41-201ENST00000459863 264 ntBASIC4.63□□□□□ -1.67
RNF4P78317 RPL5P30-201ENST00000465511 891 ntBASIC4.63□□□□□ -1.67
RNF4P78317 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
RNF4P78317 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.63□□□□□ -1.67
RNF4P78317 MRPS33P2-201ENST00000507850 322 ntBASIC4.63□□□□□ -1.67
RNF4P78317 AC092436.3-201ENST00000511788 257 ntBASIC4.63□□□□□ -1.67
RNF4P78317 GMPSP1-201ENST00000514075 579 ntBASIC4.63□□□□□ -1.67
RNF4P78317 AC008033.2-201ENST00000542626 177 ntBASIC4.63□□□□□ -1.67
RNF4P78317 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.63□□□□□ -1.67
RNF4P78317 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
RNF4P78317 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.63□□□□□ -1.67
RNF4P78317 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
RNF4P78317 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
RNF4P78317 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.63□□□□□ -1.67
RNF4P78317 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
RNF4P78317 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
RNF4P78317 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.63□□□□□ -1.67
RNF4P78317 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.63□□□□□ -1.67
RNF4P78317 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.63□□□□□ -1.67
RNF4P78317 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms