Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.03□□□□□ -1.6
LIG3P49916 MTND5P16-201ENST00000460269 1703 ntBASIC5.03□□□□□ -1.6
LIG3P49916 MAPK10-320ENST00000641462 6696 ntBASIC5.03□□□□□ -1.6
LIG3P49916 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIG3P49916 OR14L1P-202ENST00000641545 3009 ntBASIC5.03□□□□□ -1.6
LIG3P49916 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
LIG3P49916 AL592437.2-201ENST00000421655 2434 ntBASIC5.03□□□□□ -1.6
LIG3P49916 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LIG3P49916 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
LIG3P49916 Y_RNA.28-201ENST00000362554 111 ntBASIC5.03□□□□□ -1.6
LIG3P49916 RNU6-308P-201ENST00000390957 107 ntBASIC5.03□□□□□ -1.6
LIG3P49916 RNU6-817P-201ENST00000391083 104 ntBASIC5.03□□□□□ -1.6
LIG3P49916 AL139039.1-201ENST00000401900 692 ntBASIC5.03□□□□□ -1.6
LIG3P49916 AL133270.1-201ENST00000402635 279 ntBASIC5.03□□□□□ -1.6
LIG3P49916 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC5.03□□□□□ -1.6
LIG3P49916 AC092809.3-201ENST00000415453 231 ntBASIC5.03□□□□□ -1.6
LIG3P49916 RPL21P109-201ENST00000422213 475 ntBASIC5.03□□□□□ -1.6
LIG3P49916 RPL31P12-201ENST00000422587 358 ntBASIC5.03□□□□□ -1.6
LIG3P49916 EIF4HP2-201ENST00000424380 563 ntBASIC5.03□□□□□ -1.6
LIG3P49916 COX6CP13-201ENST00000428703 226 ntBASIC5.03□□□□□ -1.6
LIG3P49916 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC5.03□□□□□ -1.6
LIG3P49916 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.03□□□□□ -1.6
LIG3P49916 AL137792.2-201ENST00000443484 235 ntBASIC5.03□□□□□ -1.6
LIG3P49916 MTCO3P10-201ENST00000455912 772 ntBASIC5.03□□□□□ -1.6
LIG3P49916 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.03□□□□□ -1.6
LIG3P49916 NIP7P2-201ENST00000485801 544 ntBASIC5.03□□□□□ -1.6
LIG3P49916 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.03□□□□□ -1.6
LIG3P49916 RPS27AP13-201ENST00000498403 237 ntBASIC5.03□□□□□ -1.6
LIG3P49916 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC5.03□□□□□ -1.6
LIG3P49916 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC5.03□□□□□ -1.6
LIG3P49916 RANP9-201ENST00000519957 271 ntBASIC5.03□□□□□ -1.6
LIG3P49916 AC008033.2-201ENST00000542626 177 ntBASIC5.03□□□□□ -1.6
LIG3P49916 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC5.03□□□□□ -1.6
LIG3P49916 AC063950.1-201ENST00000552036 308 ntBASIC5.03□□□□□ -1.6
LIG3P49916 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.03□□□□□ -1.6
LIG3P49916 MIR3934-201ENST00000579806 107 ntBASIC5.03□□□□□ -1.6
LIG3P49916 AC099669.2-201ENST00000616549 437 ntBASIC5.03□□□□□ -1.6
LIG3P49916 MTND5P42-201ENST00000637720 498 ntBASIC5.03□□□□□ -1.6
LIG3P49916 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIG3P49916 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIG3P49916 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIG3P49916 MAPK10-286ENST00000641208 8747 ntBASIC5.03□□□□□ -1.6
LIG3P49916 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIG3P49916 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIG3P49916 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIG3P49916 AL133243.3-201ENST00000617415 3004 ntBASIC5.02□□□□□ -1.61
LIG3P49916 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG3P49916 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG3P49916 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG3P49916 Y_RNA.112-201ENST00000363250 102 ntBASIC5.02□□□□□ -1.61
LIG3P49916 RNU1-20P-201ENST00000363314 162 ntBASIC5.02□□□□□ -1.61
LIG3P49916 RNU1-83P-201ENST00000363426 164 ntBASIC5.02□□□□□ -1.61
LIG3P49916 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG3P49916 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG3P49916 SNORD3H-201ENST00000384486 214 ntBASIC5.02□□□□□ -1.61
LIG3P49916 RNU6-882P-201ENST00000391025 103 ntBASIC5.02□□□□□ -1.61
LIG3P49916 MIR937-201ENST00000401271 86 ntBASIC5.02□□□□□ -1.61
LIG3P49916 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.02□□□□□ -1.61
LIG3P49916 OR2AM1P-201ENST00000422137 422 ntBASIC5.02□□□□□ -1.61
LIG3P49916 AL669831.1-202ENST00000428504 417 ntBASIC5.02□□□□□ -1.61
LIG3P49916 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC5.02□□□□□ -1.61
LIG3P49916 RPL7P28-201ENST00000437739 740 ntBASIC5.02□□□□□ -1.61
LIG3P49916 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC5.02□□□□□ -1.61
LIG3P49916 TXNP1-201ENST00000441872 371 ntBASIC5.02□□□□□ -1.61
LIG3P49916 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.02□□□□□ -1.61
LIG3P49916 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIG3P49916 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.02□□□□□ -1.61
LIG3P49916 RNU6-1016P-201ENST00000516689 94 ntBASIC5.02□□□□□ -1.61
LIG3P49916 RN7SKP258-201ENST00000517151 304 ntBASIC5.02□□□□□ -1.61
LIG3P49916 OR5D15P-201ENST00000531671 942 ntBASIC5.02□□□□□ -1.61
LIG3P49916 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC5.02□□□□□ -1.61
LIG3P49916 Mico1.1-201ENST00000611698 204 ntBASIC5.02□□□□□ -1.61
LIG3P49916 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.02□□□□□ -1.61
LIG3P49916 ATP5A1P2-202ENST00000616464 443 ntBASIC5.02□□□□□ -1.61
LIG3P49916 AC140113.4-201ENST00000622087 222 ntBASIC5.02□□□□□ -1.61
LIG3P49916 AL078596.1-201ENST00000624856 447 ntBASIC5.02□□□□□ -1.61
LIG3P49916 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.02□□□□□ -1.61
LIG3P49916 AL669831.3-213ENST00000636676 183 ntBASIC5.02□□□□□ -1.61
LIG3P49916 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.02□□□□□ -1.61
LIG3P49916 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.02□□□□□ -1.61
LIG3P49916 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.02□□□□□ -1.61
LIG3P49916 AL592182.3-201ENST00000642132 3304 ntBASIC5.02□□□□□ -1.61
LIG3P49916 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG3P49916 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIG3P49916 CD36-221ENST00000534394 1741 ntTSL 2 BASIC5.02□□□□□ -1.61
LIG3P49916 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.02□□□□□ -1.61
LIG3P49916 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.02□□□□□ -1.61
LIG3P49916 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG3P49916 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
LIG3P49916 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LIG3P49916 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LIG3P49916 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.01□□□□□ -1.61
LIG3P49916 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIG3P49916 OR5P1P-201ENST00000299512 925 ntBASIC5.01□□□□□ -1.61
LIG3P49916 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIG3P49916 AC117470.1-201ENST00000381974 330 ntBASIC5.01□□□□□ -1.61
LIG3P49916 SNORA70.10-201ENST00000384515 134 ntBASIC5.01□□□□□ -1.61
LIG3P49916 RNU6-310P-201ENST00000384655 107 ntBASIC5.01□□□□□ -1.61
LIG3P49916 AL583834.1-201ENST00000406943 343 ntBASIC5.01□□□□□ -1.61
LIG3P49916 AC080125.1-201ENST00000414888 684 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms