Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RN7SL591P-201ENST00000496150 292 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 RNU6-352P-201ENST00000516908 107 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC4.91□□□□□ -1.62
COL8A1P27658 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.91□□□□□ -1.62
COL8A1P27658 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
COL8A1P27658 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 AC012616.1-201ENST00000600294 197 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.91□□□□□ -1.62
COL8A1P27658 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
COL8A1P27658 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
COL8A1P27658 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.91□□□□□ -1.62
COL8A1P27658 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
COL8A1P27658 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
COL8A1P27658 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC4.91□□□□□ -1.62
COL8A1P27658 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL8A1P27658 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL8A1P27658 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
COL8A1P27658 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL8A1P27658 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.62
COL8A1P27658 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
COL8A1P27658 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.9□□□□□ -1.62
COL8A1P27658 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.9□□□□□ -1.62
COL8A1P27658 RN7SKP104-201ENST00000362605 328 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 Y_RNA.286-201ENST00000364813 102 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 MIR539-201ENST00000365690 78 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 AC019155.1-201ENST00000382242 574 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 SNORA67-201ENST00000384423 137 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
COL8A1P27658 SNORA12.2-201ENST00000391040 156 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 RPL23AP17-201ENST00000401064 499 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 RN7SKP27-201ENST00000410684 333 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 TMSB10P2-201ENST00000416049 131 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 MTND4LP9-201ENST00000427694 174 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC4.9□□□□□ -1.63
COL8A1P27658 RNU7-87P-201ENST00000459343 62 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 AP001025.1-201ENST00000486139 332 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 SNORA27.4-201ENST00000516650 95 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 RN7SKP60-201ENST00000516985 239 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
COL8A1P27658 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.9□□□□□ -1.63
COL8A1P27658 AC104581.2-201ENST00000572227 430 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 MIR5692C2-201ENST00000577959 77 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.9□□□□□ -1.63
COL8A1P27658 AC009318.2-201ENST00000610917 651 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 MIR8076-201ENST00000611401 83 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 TUG1_2.1-201ENST00000614234 87 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 AC011476.5-201ENST00000615594 130 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 AL591926.4-201ENST00000616895 298 ntBASIC4.9□□□□□ -1.63
COL8A1P27658 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.63
COL8A1P27658 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL8A1P27658 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL8A1P27658 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC4.9□□□□□ -1.63
COL8A1P27658 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
COL8A1P27658 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
COL8A1P27658 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL8A1P27658 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL8A1P27658 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
COL8A1P27658 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL8A1P27658 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
COL8A1P27658 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.89□□□□□ -1.63
COL8A1P27658 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 AP004607.3-201ENST00000530354 3915 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AL034546.1-201ENST00000623740 3693 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 AC005725.1-201ENST00000577346 2607 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL8A1P27658 Y_RNA.23-201ENST00000362496 106 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 Y_RNA.331-201ENST00000365267 102 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 Y_RNA.357-201ENST00000365487 109 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 RNA5SP211-201ENST00000365516 117 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
COL8A1P27658 RNU6-607P-201ENST00000411283 108 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.89□□□□□ -1.63
COL8A1P27658 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.89□□□□□ -1.63
COL8A1P27658 AL358453.1-201ENST00000422522 250 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 REREP1Y-201ENST00000422655 198 ntBASIC4.89□□□□□ -1.63
COL8A1P27658 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms