Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.21□□□□□ -1.74
COL3A1P02461 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC4.21□□□□□ -1.74
COL3A1P02461 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL3A1P02461 MAPK10-373ENST00000641983 6772 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 AC093909.5-201ENST00000621839 1799 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 RNU4-79P-201ENST00000362764 141 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 RNU6-433P-201ENST00000363216 104 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 RNU6-1085P-201ENST00000363576 107 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.21□□□□□ -1.74
COL3A1P02461 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.21□□□□□ -1.74
COL3A1P02461 RNU6-483P-201ENST00000384088 108 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 SNORD67-201ENST00000390833 111 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 RNU6-332P-201ENST00000391193 108 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 RPS3AP3-201ENST00000411933 242 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 HMGB1P11-201ENST00000413899 637 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 RPS3AP9-201ENST00000417027 792 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.21□□□□□ -1.74
COL3A1P02461 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.21□□□□□ -1.74
COL3A1P02461 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.21□□□□□ -1.74
COL3A1P02461 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.21□□□□□ -1.74
COL3A1P02461 FCF1P1-201ENST00000432690 571 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 RPS3AP14-201ENST00000483907 780 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 AC091544.1-201ENST00000484702 348 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 AC108078.3-201ENST00000502633 489 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.21□□□□□ -1.74
COL3A1P02461 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.21□□□□□ -1.74
COL3A1P02461 AC022878.1-201ENST00000530684 149 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
COL3A1P02461 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.21□□□□□ -1.74
COL3A1P02461 AL050343.2-201ENST00000607338 280 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
COL3A1P02461 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.21□□□□□ -1.74
COL3A1P02461 OR5BR1P-201ENST00000524992 1330 ntBASIC4.21□□□□□ -1.74
COL3A1P02461 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.21□□□□□ -1.74
COL3A1P02461 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
COL3A1P02461 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
COL3A1P02461 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
COL3A1P02461 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL3A1P02461 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL3A1P02461 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.2□□□□□ -1.74
COL3A1P02461 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL3A1P02461 MIR423-201ENST00000362201 94 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 SNORA38.1-201ENST00000364172 131 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL3A1P02461 MIR217-201ENST00000384817 110 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL3A1P02461 RNA5SP105-201ENST00000391123 113 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 AL031121.1-201ENST00000406553 254 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 MTCO3P12-201ENST00000416718 547 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.2□□□□□ -1.74
COL3A1P02461 MTND2P23-201ENST00000422990 651 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.2□□□□□ -1.74
COL3A1P02461 CALM1P1-201ENST00000442082 433 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.2□□□□□ -1.74
COL3A1P02461 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.2□□□□□ -1.74
COL3A1P02461 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.2□□□□□ -1.74
COL3A1P02461 AC022364.2-201ENST00000457963 554 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 KCTD9P5-201ENST00000504141 1170 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.2□□□□□ -1.74
COL3A1P02461 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.2□□□□□ -1.74
COL3A1P02461 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.2□□□□□ -1.74
COL3A1P02461 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.2□□□□□ -1.74
COL3A1P02461 Y_RNA.704-201ENST00000516851 102 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 AP001189.2-201ENST00000527320 189 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.2□□□□□ -1.74
COL3A1P02461 AL157394.1-201ENST00000562983 1224 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 AC012182.1-201ENST00000570133 895 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 AL365204.3-201ENST00000612448 685 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 ATP5A1P2-202ENST00000616464 443 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 AL160413.1-201ENST00000622780 310 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 AC073476.4-201ENST00000628409 72 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 MTND5P42-201ENST00000637720 498 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 AC107982.1-201ENST00000507171 1300 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 NEAT1-202ENST00000501122 22743 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.2□□□□□ -1.74
COL3A1P02461 AL353743.1-202ENST00000431724 1695 ntBASIC4.2□□□□□ -1.74
COL3A1P02461 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.2□□□□□ -1.74
COL3A1P02461 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL3A1P02461 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL3A1P02461 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.19□□□□□ -1.74
COL3A1P02461 RNU6-878P-201ENST00000384578 110 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
COL3A1P02461 AMD1P2-201ENST00000412936 992 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.19□□□□□ -1.74
COL3A1P02461 AL354751.2-201ENST00000415471 210 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 AC093084.1-201ENST00000424233 687 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 AL035410.1-201ENST00000427409 427 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.19□□□□□ -1.74
COL3A1P02461 SAR1AP4-201ENST00000429225 591 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.19□□□□□ -1.74
COL3A1P02461 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL3A1P02461 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.19□□□□□ -1.74
COL3A1P02461 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.19□□□□□ -1.74
COL3A1P02461 RN7SL429P-201ENST00000479090 223 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 RN7SL489P-201ENST00000486185 223 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 RN7SL327P-201ENST00000488659 223 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.19□□□□□ -1.74
COL3A1P02461 AC096576.1-201ENST00000489014 359 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 AC111193.1-201ENST00000504097 155 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms