Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AC005332.5-201ENST00000591222 2919 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-562P-201ENST00000362731 107 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-960P-201ENST00000364056 120 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 SNORA70F-201ENST00000384142 135 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 Y_RNA.645-201ENST00000391229 102 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AL391417.1-201ENST00000404100 426 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AL445189.1-201ENST00000405722 338 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AL139095.3-201ENST00000419672 1203 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 E2F6P2-201ENST00000420708 748 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 RSL24D1P6-201ENST00000426934 401 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 H2AFZP5-201ENST00000446960 382 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 U8.20-201ENST00000459445 131 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 RPS20P21-201ENST00000466859 343 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AC128713.1-201ENST00000471495 306 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 MTCO3P44-201ENST00000510977 541 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 FKBP1BP1-201ENST00000553366 325 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 AL121576.1-201ENST00000556055 276 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 MIR5692C1-201ENST00000585309 91 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CHMP3Q9Y3E7 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 SNORD113.2-201ENST00000364166 89 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 RNVU1-3-201ENST00000364313 161 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 SNORA71.2-201ENST00000364941 134 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-432P-201ENST00000384196 109 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-516P-201ENST00000411381 104 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 RPL23AP38-201ENST00000423801 469 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC092013.1-201ENST00000438795 332 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 SNORD97-201ENST00000459187 142 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC090686.1-201ENST00000481577 749 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AP002812.1-201ENST00000495378 474 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 CEACAMP10-202ENST00000495431 496 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC026782.1-201ENST00000512952 449 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-699P-201ENST00000517081 110 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC090115.3-201ENST00000553218 849 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 MYL12BP1-201ENST00000569826 507 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 RPL23AP84-201ENST00000571193 464 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 CYCSP40-201ENST00000575927 294 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC113195.1-201ENST00000579952 141 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC110743.1-201ENST00000584870 478 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 DLEU2_5.1-201ENST00000615567 84 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 AC123768.4-201ENST00000616244 701 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 PISRT1.1-201ENST00000616930 107 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 MIR6810-201ENST00000622701 70 ntBASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP3Q9Y3E7 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 SNORD3E-201ENST00000362899 217 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-593P-201ENST00000364716 112 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 Y_RNA.455-201ENST00000384230 98 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 SNORA16.2-201ENST00000390991 127 ntBASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms