Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC007424.1-203ENST00000554613 687 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AL133153.1-201ENST00000557756 303 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AP001429.1-201ENST00000602568 530 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AP002360.4-201ENST00000606980 481 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AP001330.5-201ENST00000607176 411 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC023043.4-201ENST00000612081 449 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC006338.1-201ENST00000618453 749 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 MIR6758-201ENST00000620653 63 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 MIR1321-201ENST00000637766 79 ntBASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIMCH1Q9UPQ0 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AL136964.1-201ENST00000622038 2990 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 Y_RNA.256-201ENST00000364594 104 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 RNU1-13P-201ENST00000384499 162 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 SOD2P1-201ENST00000396543 562 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AL583834.1-201ENST00000406943 343 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 Y_RNA.604-201ENST00000410574 102 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 RPS7P15-201ENST00000415804 584 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AC007283.2-201ENST00000424739 197 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 C4BPAP2-201ENST00000428434 478 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 OR4K11P-201ENST00000431829 904 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 NDUFB1P1-201ENST00000435191 180 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 MTCO3P18-201ENST00000440206 761 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AC092989.1-201ENST00000481235 277 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AC020893.1-201ENST00000502452 580 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 RNU2-10P-201ENST00000516375 211 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-352P-201ENST00000516908 107 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-410P-201ENST00000517006 107 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AC090572.1-201ENST00000519251 160 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AC105224.1-201ENST00000587055 421 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 KLKP1-201ENST00000595979 403 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AC244100.1-202ENST00000621554 382 ntBASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIMCH1Q9UPQ0 AC138915.3-201ENST00000562908 1389 ntBASIC4.4□□□□□ -1.7
LIMCH1Q9UPQ0 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
LIMCH1Q9UPQ0 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 RPL32P3-201ENST00000359025 275 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 MIR372-201ENST00000362225 67 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-1155P-201ENST00000363554 107 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-1322P-201ENST00000364309 107 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-283P-201ENST00000364788 107 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 RNU1-39P-201ENST00000383897 165 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 SNORA3.3-201ENST00000408712 125 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 RNU4-65P-201ENST00000410473 140 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 HMGB3P20-201ENST00000417997 600 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 USP9YP27-201ENST00000418455 438 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 ELOCP14-201ENST00000428070 331 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AL117339.2-201ENST00000430475 180 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 RPL7P28-201ENST00000437739 740 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 ELOCP7-201ENST00000439968 331 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AC114755.5-201ENST00000447760 831 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AC027673.1-201ENST00000456245 405 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 SNORD108-201ENST00000459332 71 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AC068305.1-201ENST00000497406 726 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AC135721.1-201ENST00000497954 479 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 RPL21P12-201ENST00000559810 515 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AC012669.1-201ENST00000603209 283 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AL606490.9-201ENST00000603331 271 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 AC002553.4-201ENST00000616896 331 ntBASIC4.4□□□□□ -1.71
LIMCH1Q9UPQ0 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms