Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC025048.6-202ENST00000627667 438 ntBASIC3.63□□□□□ -1.83
LIMA1Q9UHB6 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
LIMA1Q9UHB6 ZNF285B-201ENST00000561698 1767 ntBASIC3.63□□□□□ -1.83
LIMA1Q9UHB6 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIMA1Q9UHB6 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.63□□□□□ -1.83
LIMA1Q9UHB6 AL355596.1-201ENST00000565399 3996 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 MIR148B-201ENST00000362252 99 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 RNU4-35P-201ENST00000362588 141 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 RNU5A-1-201ENST00000362698 116 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 RNA5SP479-201ENST00000364858 117 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 SNORA23-201ENST00000365128 182 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 SNORD115.1-201ENST00000391109 76 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 SNORA57.1-201ENST00000391227 145 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AP000567.1-201ENST00000406413 156 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 RPL21P32-201ENST00000419877 477 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AL353777.1-201ENST00000425552 326 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AL356583.2-201ENST00000426536 280 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 ARF4P2-201ENST00000430209 526 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AL445584.1-201ENST00000431451 330 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AC115115.1-201ENST00000449927 248 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 USP9YP12-201ENST00000450481 570 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 RNU7-59P-201ENST00000459101 61 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AC078785.3-201ENST00000476607 425 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 HSPE1P6-201ENST00000479457 291 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AC106707.2-201ENST00000484182 374 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 KCTD9P5-201ENST00000504141 1170 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 FABP5P5-201ENST00000515537 406 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 RNU1-61P-201ENST00000516107 151 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AP002748.2-201ENST00000528671 348 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AP000857.1-201ENST00000532151 543 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 MIR3921-201ENST00000577308 85 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AC011468.4-201ENST00000603942 409 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AL358072.1-201ENST00000604156 575 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 TUG1_2.1-201ENST00000614234 87 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
LIMA1Q9UHB6 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 RNA5SP124-201ENST00000362739 110 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 RNU6-223P-201ENST00000362830 107 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 U3.4-201ENST00000363352 213 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 RNU5A-8P-201ENST00000364102 114 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 SNORA5A-201ENST00000384111 134 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AL109755.1-201ENST00000401791 649 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 Y_RNA.608-201ENST00000410647 95 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 UBE2FP1-201ENST00000416536 447 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 USP9YP13-201ENST00000417797 480 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC098826.1-201ENST00000433943 471 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 COX6CP2-201ENST00000444980 225 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 SNRPGP9-201ENST00000456025 225 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 RPS23P3-201ENST00000470993 430 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 MTND4LP31-201ENST00000514859 294 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 RNA5SP217-201ENST00000515959 91 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC022616.6-201ENST00000520479 119 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 FAM60DP-201ENST00000524174 632 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC123904.2-201ENST00000548059 300 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC055876.1-202ENST00000567053 138 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC012414.6-201ENST00000568241 401 ntBASIC3.61□□□□□ -1.83
LIMA1Q9UHB6 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms