Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RPL7P43-201ENST00000478876 753 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC008897.1-201ENST00000494006 347 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC015795.1-201ENST00000513669 327 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 RN7SKP276-201ENST00000516242 268 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 RNU2-53P-201ENST00000516257 147 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AF279873.1-201ENST00000523393 313 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 RN7SL652P-201ENST00000577769 300 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AL512782.1-201ENST00000603093 364 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AL031320.1-201ENST00000604177 357 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC004805.2-201ENST00000605382 482 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 RNU6-266P-201ENST00000364225 107 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 Y_RNA.378-201ENST00000365652 113 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 Y_RNA.389-201ENST00000383924 113 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 SNORA75B-201ENST00000384053 137 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 RNU6-890P-201ENST00000384121 107 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 Y_RNA.496-201ENST00000384444 101 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 MIR454-201ENST00000390180 115 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AC026410.2-201ENST00000460281 156 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AC104563.1-201ENST00000476147 376 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AC011005.3-201ENST00000491624 395 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 GZMAP1-201ENST00000503054 631 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AC092436.1-201ENST00000506450 503 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AF186190.1-201ENST00000517470 480 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AP001922.4-201ENST00000526967 290 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AC023157.2-201ENST00000540596 141 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 RRN3P3-201ENST00000549207 578 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AC105224.1-201ENST00000587055 421 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 NF1P5-201ENST00000588287 448 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 GLUD1P4-201ENST00000590914 418 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 MIR6719-201ENST00000622428 87 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AC243312.2-201ENST00000623340 601 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 AL158163.1-201ENST00000603915 1649 ntBASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
CCDC39Q9UFE4 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 SNORD113-7-201ENST00000363762 77 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 RNA5SP22-201ENST00000365393 109 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AL109755.1-201ENST00000401791 649 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 Z98745.1-201ENST00000402553 494 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 RPS4XP9-201ENST00000405151 780 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 BX510359.2-201ENST00000417920 305 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 CHIAP3-201ENST00000423668 1133 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 RSL24D1P6-201ENST00000426934 401 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 RPL21P91-201ENST00000429231 479 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 HMGB1P9-201ENST00000429856 646 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 HLA-N-201ENST00000437516 135 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AC016831.4-201ENST00000438302 307 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 EEF1A1P1-201ENST00000447052 739 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 MTND1P17-201ENST00000448961 204 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 RPS29P15-201ENST00000458329 171 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 RPL35AP28-201ENST00000459730 331 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 IFITM8P-201ENST00000522529 394 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AP000763.2-201ENST00000540641 163 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 SULT1C2P1-202ENST00000562418 459 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 MIR3934-201ENST00000579806 107 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 MIR3672-201ENST00000584290 82 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AC011890.2-201ENST00000613393 294 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AC092608.2-201ENST00000624427 218 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AL732372.2-225ENST00000642124 456 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms