Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 IGKV2-23-201ENST00000518729 323 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 AC040896.1-201ENST00000613819 479 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 MTCO1P24-201ENST00000515438 1558 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 DDX10P1-201ENST00000448545 1933 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.66□□□□□ -1.5
CCDC87Q9NVE4 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 MIR208A-201ENST00000362287 71 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 PTMAP2-201ENST00000397627 327 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 RPL7P2-201ENST00000427639 268 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 AF228730.2-201ENST00000438784 848 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 RPL7P23-201ENST00000493874 747 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 AC108078.2-201ENST00000510750 236 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 RNU6-1088P-201ENST00000516850 104 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 RANP3-201ENST00000530970 276 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 OR11H5P-201ENST00000554039 926 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 AC015912.2-201ENST00000571053 181 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 AC124303.1-201ENST00000605703 360 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 MIR6130-201ENST00000619419 109 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 AL359757.2-201ENST00000624309 274 ntBASIC5.65□□□□□ -1.5
CCDC87Q9NVE4 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
CCDC87Q9NVE4 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC87Q9NVE4 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC87Q9NVE4 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.51
CCDC87Q9NVE4 ZNF33CP-201ENST00000432492 2030 ntBASIC5.65□□□□□ -1.51
CCDC87Q9NVE4 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.65□□□□□ -1.51
CCDC87Q9NVE4 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.65□□□□□ -1.51
CCDC87Q9NVE4 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.65□□□□□ -1.51
CCDC87Q9NVE4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC87Q9NVE4 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 OR51H2P-202ENST00000641424 3046 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 AL359922.3-201ENST00000624779 1670 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 ZBTB8OSP1-201ENST00000342688 498 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 Y_RNA.197-201ENST00000364004 102 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 RNA5SP387-201ENST00000364226 106 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 RNA5SP56-201ENST00000410277 118 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 RNU4-14P-201ENST00000410858 122 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 UBE2FP1-201ENST00000416536 447 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 ACTR3BP6-201ENST00000422332 1241 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 HMGB3P11-201ENST00000440127 604 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 TRBV1-201ENST00000476502 284 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 SNORD116-26-201ENST00000516006 96 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 RNU6-256P-201ENST00000516747 97 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 IMMP1LP2-201ENST00000552954 492 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 AC093591.2-201ENST00000565254 3843 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 MIR4790-201ENST00000577799 79 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 RN7SL600P-201ENST00000581811 299 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 MIR5690-201ENST00000583739 73 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 AC092747.3-201ENST00000603769 301 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 AC103705.1-201ENST00000619013 241 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 AL022322.2-201ENST00000624072 20397 ntBASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC87Q9NVE4 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 RNA5SP513-201ENST00000364648 118 ntBASIC5.63□□□□□ -1.51
CCDC87Q9NVE4 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 174.7 ms