Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AL354719.1-201ENST00000406535 843 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC244098.2-201ENST00000422068 99 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 USP12PX-201ENST00000432383 1057 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC090774.1-201ENST00000435925 246 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC004866.2-201ENST00000438285 481 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 MTCO3P45-201ENST00000443036 613 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC008481.1-201ENST00000463278 396 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC091153.1-201ENST00000466297 402 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 RPL29P14-201ENST00000495837 428 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 NIPA2P2-201ENST00000496376 1083 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC116562.3-201ENST00000506136 177 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC114781.4-201ENST00000513707 639 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC068587.5-201ENST00000528506 175 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC103843.2-201ENST00000530523 682 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 BNIP3P9-201ENST00000603714 553 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC010591.1-201ENST00000603941 649 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC008945.2-201ENST00000606056 604 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 DISC2.1-201ENST00000612827 205 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 AC055839.1-201ENST00000634467 498 ntBASIC4.23□□□□□ -1.73
TDP1Q9NUW8 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TDP1Q9NUW8 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AL356489.2-201ENST00000566968 3528 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AC073343.1-201ENST00000328239 651 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 RNU1-15P-201ENST00000353977 144 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 RNU6-1284P-201ENST00000363701 100 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 Y_RNA.255-201ENST00000364581 97 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 RNU6-996P-201ENST00000365438 107 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 SNORD3H-201ENST00000384486 214 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 RNU6-882P-201ENST00000391025 103 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 PTMAP2-201ENST00000397627 327 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 RNU6ATAC-201ENST00000408749 126 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 RPL21P111-201ENST00000418453 477 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AL358472.1-201ENST00000431295 329 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 RPL23AP89-201ENST00000439324 255 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 MTND4P25-201ENST00000441039 533 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 SNRPEP8-201ENST00000442866 260 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 SNORD97-201ENST00000459187 142 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 RPS27AP1-201ENST00000475545 471 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AL163973.1-201ENST00000484753 577 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 RNU6-507P-201ENST00000516045 100 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AC025627.2-201ENST00000576220 160 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AL592436.1-201ENST00000605135 558 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AC012443.1-201ENST00000605605 231 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 MIR6868-201ENST00000611215 58 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AC004696.1-201ENST00000614345 607 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 AL158196.1-201ENST00000616786 434 ntBASIC4.22□□□□□ -1.73
TDP1Q9NUW8 SNHG22-203ENST00000617833 660 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 229 ms