Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AL391994.1-201ENST00000254724 282 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 RNU5A-1-201ENST00000362698 116 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 RNU6-853P-201ENST00000364306 107 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 RNVU1-14-201ENST00000384770 164 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 MIR634-201ENST00000385208 97 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 RNU6-754P-201ENST00000391166 107 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 ATG3P1-201ENST00000419507 911 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 TMEM167AP1-201ENST00000423409 219 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 RPL23AP58-201ENST00000440453 469 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AL591503.2-201ENST00000442314 1005 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AL606662.1-201ENST00000445763 553 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 RBMY2UP-201ENST00000453474 324 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AL049714.1-201ENST00000466686 347 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 RPL31P60-201ENST00000478450 367 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 RNA5SP217-201ENST00000515959 91 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 SNORA3.4-201ENST00000515969 96 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC103843.2-201ENST00000530523 682 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC068587.4-201ENST00000533893 186 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC011611.1-201ENST00000552179 197 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AL157394.1-201ENST00000562983 1224 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC011260.1-201ENST00000578420 472 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AP000254.1-201ENST00000609934 520 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC079395.3-201ENST00000615161 484 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC017071.1-201ENST00000564407 2204 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC093831.2-201ENST00000624393 3427 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC009902.3-201ENST00000606235 2172 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3□□□□□ -1.93
DDX28Q9NUL7 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3□□□□□ -1.93
DDX28Q9NUL7 AC233263.6-201ENST00000631132 1963 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3□□□□□ -1.93
DDX28Q9NUL7 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3□□□□□ -1.93
DDX28Q9NUL7 SNORA1.3-201ENST00000384676 136 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 RNU6-253P-201ENST00000384730 105 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AC119751.3-201ENST00000399720 670 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
DDX28Q9NUL7 RNU6-516P-201ENST00000411381 104 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 Z92545.1-201ENST00000411782 234 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3□□□□□ -1.93
DDX28Q9NUL7 AL356968.1-201ENST00000416622 474 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AC010099.3-201ENST00000423896 409 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3□□□□□ -1.93
DDX28Q9NUL7 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3□□□□□ -1.93
DDX28Q9NUL7 ATP5JP1-201ENST00000431631 322 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AC109583.1-201ENST00000432156 268 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AL159987.2-201ENST00000432754 307 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 UBE2FP3-201ENST00000436366 524 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 RSU1P2-202ENST00000437884 485 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3□□□□□ -1.93
DDX28Q9NUL7 AC092641.1-201ENST00000440229 772 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AC008264.1-201ENST00000447612 367 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 ZNF736P8Y-201ENST00000451913 669 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AL590639.1-201ENST00000456484 337 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 RN7SL601P-201ENST00000471221 293 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 HMGN1P28-201ENST00000521340 364 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3□□□□□ -1.93
DDX28Q9NUL7 AC087276.1-201ENST00000529659 480 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AC007536.1-201ENST00000533382 349 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3□□□□□ -1.93
DDX28Q9NUL7 MIR3200-201ENST00000580767 85 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
DDX28Q9NUL7 MIR3922-201ENST00000585192 84 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 AC131902.3-201ENST00000611767 581 ntBASIC3□□□□□ -1.93
DDX28Q9NUL7 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
DDX28Q9NUL7 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 SDAD1P2-201ENST00000441308 2028 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC011460.1-201ENST00000636268 1834 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 Y_RNA.18-201ENST00000362461 102 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 U3.6-201ENST00000363622 211 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 RPS4XP3-201ENST00000398541 413 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 MIR1289-1-201ENST00000408836 144 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 Z99755.1-201ENST00000414048 380 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC098592.1-201ENST00000419352 333 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AL158156.1-201ENST00000422509 473 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AC018630.2-202ENST00000422992 927 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 AL356867.1-201ENST00000429623 299 ntBASIC2.99□□□□□ -1.93
DDX28Q9NUL7 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms