Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 TPMTP1-201ENST00000592307 737 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC069431.2-201ENST00000604149 1099 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC097504.2-201ENST00000608088 454 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AP002826.1-201ENST00000608835 315 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 PART1_2.1-201ENST00000612397 250 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC079597.1-201ENST00000624306 508 ntBASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
EXOSC4Q9NPD3 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 FRG1BP-201ENST00000278882 761 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 SET-203ENST00000372688 801 ntTSL 2 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 RNU6-198P-201ENST00000384258 104 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 Y_RNA.548-201ENST00000384656 105 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 SNORA48.5-201ENST00000391143 135 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC234781.2-201ENST00000426370 994 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AL365496.1-201ENST00000426885 215 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC024082.2-201ENST00000434771 238 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 NANOGP2-201ENST00000435391 727 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 MTND2P39-201ENST00000457230 764 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AP000852.1-201ENST00000472460 573 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 MTND3P3-201ENST00000505004 126 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC113347.3-201ENST00000509113 148 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 RN7SKP40-201ENST00000517211 242 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC026241.1-201ENST00000517873 2142 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC090888.1-201ENST00000561335 1141 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC010546.1-201ENST00000569391 485 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 BNIP3P33-201ENST00000598912 569 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 DUXAP3-201ENST00000603616 594 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AL031176.1-201ENST00000604554 466 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC069304.2-201ENST00000605154 435 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC093732.2-201ENST00000607950 274 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC243773.3-201ENST00000613270 256 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC104763.3-201ENST00000613765 618 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC025588.4-201ENST00000615802 908 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 AP000526.1-201ENST00000603308 1388 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 OR4G11P-202ENST00000642116 1414 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 CDR1-202ENST00000625883 1485 ntBASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
EXOSC4Q9NPD3 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 MIR627-201ENST00000384979 97 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 MIR122-201ENST00000385044 85 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 UBA52P6-201ENST00000399822 382 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 Z75741.2-201ENST00000417272 1167 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 USP9YP20-201ENST00000419224 558 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AL139132.1-201ENST00000431587 344 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 MTCO1P53-201ENST00000441633 699 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 WASF1P1-201ENST00000447560 1131 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 SUMO2P2-201ENST00000456482 255 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 SLC25A15P5-201ENST00000508033 253 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AC093677.1-201ENST00000514414 678 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 SLC2A13P1-201ENST00000531560 322 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 HIGD1AP17-201ENST00000554576 276 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 HSPE1P3-201ENST00000559254 309 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 RPL23AP78-201ENST00000599928 470 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AC013444.2-201ENST00000603317 787 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AL138478.1-201ENST00000612252 832 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 AC068880.5-201ENST00000624331 290 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 LINC02211-204ENST00000642024 1070 ntBASIC2.3□□□□□ -2.04
EXOSC4Q9NPD3 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms