Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC016696.1-201ENST00000446949 318 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RPL7P52-201ENST00000449200 742 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AL590365.1-201ENST00000450788 243 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RPL21P103-201ENST00000479921 488 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RNU6-27P-201ENST00000516146 107 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RNU6-405P-201ENST00000516637 110 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 MTCYBP20-201ENST00000524239 1129 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC022878.1-201ENST00000530684 149 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AP002453.2-201ENST00000533503 320 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC090615.1-201ENST00000577519 154 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 TPMTP1-201ENST00000592307 737 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC068790.6-201ENST00000602558 258 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AL355812.1-201ENST00000603215 216 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC008739.3-201ENST00000603262 127 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC112191.3-201ENST00000604371 277 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC138749.5-201ENST00000611461 208 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC116165.2-201ENST00000616705 206 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC090229.1-201ENST00000590983 1609 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 MTND5P29-201ENST00000458676 1807 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 RNY4P24-201ENST00000362735 96 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 RNA5SP258-201ENST00000362750 119 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 RNU6-853P-201ENST00000364306 107 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 Y_RNA.493-201ENST00000384422 102 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 RNU6-297P-201ENST00000384636 107 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AL356421.1-201ENST00000403255 413 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 RNA5SP56-201ENST00000410277 118 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 RNU6-248P-201ENST00000410720 107 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 RNU4-47P-201ENST00000410876 114 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 RNA5SP120-201ENST00000410900 112 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 FAM103A2P-201ENST00000444122 354 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 ELOCP30-201ENST00000447108 299 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 Z82190.1-201ENST00000454534 490 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 RNU6-714P-201ENST00000516963 103 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 RNU6-1003P-201ENST00000517099 105 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 MIR5680-201ENST00000577577 84 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 MTND1P15-201ENST00000579262 949 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AL669831.4-202ENST00000590817 238 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC006329.2-201ENST00000611491 394 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC019176.2-201ENST00000611579 315 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 Z99129.1-201ENST00000612510 255 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC005332.10-201ENST00000612725 619 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 MIR8058-201ENST00000615737 89 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC015540.1-201ENST00000615828 501 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC040168.1-201ENST00000623594 991 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AL359740.1-201ENST00000624340 592 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC091925.2-201ENST00000625059 256 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
SIX2Q9NPC8 AL035425.3-201ENST00000564206 4996 ntBASIC3.31□□□□□ -1.88
SIX2Q9NPC8 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 RNU6-356P-201ENST00000384140 107 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 SNORD51-201ENST00000384320 80 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 RNU6-1207P-201ENST00000384343 107 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 Y_RNA.517-201ENST00000384551 106 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 SNORA40.3-201ENST00000390964 122 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 SNORD115.1-201ENST00000391109 76 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 Y_RNA.608-201ENST00000410647 95 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms