Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 DEFB108F-201ENST00000344638 222 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 Y_RNA.373-201ENST00000365600 103 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 SNORA36C-201ENST00000384289 132 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 Y_RNA.529-201ENST00000384586 119 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 MIR129-1-201ENST00000384972 72 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 RNA5SP111-201ENST00000411386 101 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC007390.1-201ENST00000415722 356 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 PDCL2P1-201ENST00000419302 352 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC079780.1-201ENST00000428259 207 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 RPS24P6-201ENST00000452670 400 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 snoU13.24-201ENST00000458998 104 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 RPL37P6-201ENST00000460682 294 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC004801.2-202ENST00000463559 283 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC108751.2-201ENST00000469993 231 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 Y_RNA.654-201ENST00000497848 106 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 FGF7P4-201ENST00000509595 295 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 RNU7-30P-201ENST00000516835 62 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC109635.4-202ENST00000531666 412 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC011611.1-201ENST00000552179 197 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AL022345.1-201ENST00000607292 135 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AP005019.3-201ENST00000620418 560 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AC006971.1-201ENST00000407916 4486 ntBASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 RNU4-73P-201ENST00000363164 141 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 RNU6-82P-201ENST00000363970 107 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 SNORA7.2-201ENST00000364446 145 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 SNORA56-201ENST00000383966 129 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 RNU6-116P-201ENST00000384042 109 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 Y_RNA.530-201ENST00000384587 101 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 RPL32P23-201ENST00000397237 405 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AL356432.1-201ENST00000405809 419 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AL645937.1-202ENST00000421799 937 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 RPL23AP93-201ENST00000440847 484 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 FGF7P3-201ENST00000454645 303 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 RPL23AP31-201ENST00000456160 467 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AMD1P1-201ENST00000457220 922 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 snoU13.4-201ENST00000458916 104 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AC006463.2-201ENST00000473326 348 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 RN7SL459P-201ENST00000481078 302 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 RBBP4P6-201ENST00000508098 202 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 Y_RNA.665-201ENST00000516177 98 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 MYL12AP1-201ENST00000518490 515 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 NARSP2-201ENST00000518524 679 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 RPL7P20-201ENST00000520308 745 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 GLYCAM1-201ENST00000546596 285 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 RPS3AP23-202ENST00000574601 686 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AC010928.3-201ENST00000587712 541 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AC005498.1-201ENST00000592125 465 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AC007687.1-201ENST00000602704 304 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AC008745.1-201ENST00000604064 271 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AC067931.1-201ENST00000624190 671 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AP001350.1-201ENST00000601906 1524 ntBASIC4.5□□□□□ -1.69
TRIM39Q9HCM9 AC027290.2-201ENST00000623210 18662 ntBASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 RNU6-1013P-201ENST00000384180 107 ntBASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 AC080125.1-201ENST00000414888 684 ntBASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 RPEP3-201ENST00000425462 676 ntBASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 RPS12P10-201ENST00000427031 377 ntBASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 DNAJC19P7-201ENST00000428811 344 ntBASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 TAAR7P-201ENST00000436141 242 ntBASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 HMGN2P21-201ENST00000447764 270 ntBASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 AC092001.1-201ENST00000453012 261 ntBASIC4.49□□□□□ -1.69
TRIM39Q9HCM9 RNU6-1208P-201ENST00000459588 107 ntBASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms