Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
LRRC40Q9H9A6 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.81□□□□□ -1.96
LRRC40Q9H9A6 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 AL022578.1-201ENST00000439330 1433 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 Y_RNA.548-201ENST00000384656 105 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 AL356057.2-201ENST00000403318 432 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 AC068533.2-201ENST00000411872 306 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 BX682237.1-201ENST00000415016 335 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 WASF1P1-201ENST00000447560 1131 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 RPL23AP20-201ENST00000447965 421 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 NANOGNBP1-201ENST00000448444 480 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 RPL18AP17-201ENST00000455326 198 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 RPL31P41-201ENST00000477967 372 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 RN7SL297P-201ENST00000483161 293 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 RPL23AP70-201ENST00000483361 460 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 AC079203.1-201ENST00000487972 404 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 AL133271.1-201ENST00000538229 291 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 AL132857.1-201ENST00000555180 708 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 AL355836.1-201ENST00000555951 870 ntBASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.8□□□□□ -1.96
LRRC40Q9H9A6 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 MIR208A-201ENST00000362287 71 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 Y_RNA.234-201ENST00000364409 97 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 Y_RNA.408-201ENST00000383987 102 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 MTCYBP3-201ENST00000445588 1137 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 BMI1P1-201ENST00000445879 941 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 ARPC3P5-201ENST00000448802 534 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AC087588.1-201ENST00000462203 316 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 S100A11P2-201ENST00000467589 312 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 RPL9P33-201ENST00000484311 566 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 LARP1BP2-201ENST00000486594 519 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AC069306.1-201ENST00000507006 843 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 RNU6-467P-201ENST00000517027 110 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AC104072.1-201ENST00000568817 668 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 BNIP3P33-201ENST00000598912 569 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AC112220.2-201ENST00000605513 533 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 RPL23AP88-201ENST00000605759 454 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 AL357080.1-201ENST00000617394 239 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 CR381653.2-201ENST00000624041 768 ntBASIC2.79□□□□□ -1.96
LRRC40Q9H9A6 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 RNU5E-8P-201ENST00000363502 116 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 RNU1-109P-201ENST00000383960 147 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 SNORA44-201ENST00000384584 132 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 RPS15AP27-201ENST00000449183 343 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 RNU7-136P-201ENST00000458819 69 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 HIGD1AP13-201ENST00000509878 289 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 SNORA74D-201ENST00000516404 141 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 AL359198.2-201ENST00000611836 194 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 AL603758.1-201ENST00000618654 241 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 MIR4275-201ENST00000636486 87 ntBASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.78□□□□□ -1.96
LRRC40Q9H9A6 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms