Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNU6-289P-201ENST00000364093 107 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC024082.2-201ENST00000434771 238 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC084290.1-201ENST00000434995 374 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 SDCBPP1-201ENST00000440192 890 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AL606517.1-201ENST00000446914 387 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 MTND1P16-201ENST00000465177 898 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 RPS27AP9-201ENST00000477681 438 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC020699.1-201ENST00000505161 445 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 RAC1P5-201ENST00000512182 576 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 RNU6-714P-201ENST00000516963 103 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 RPL23AP78-201ENST00000599928 470 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC245297.2-201ENST00000610119 565 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AL450472.3-201ENST00000615578 367 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC140725.3-201ENST00000616193 880 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC009039.2-201ENST00000624524 529 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC079228.1-201ENST00000624774 1049 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AL390862.1-201ENST00000635467 1469 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 ASNSP3-201ENST00000451989 1306 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 RNU6-28P-201ENST00000362378 107 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 RNU6-433P-201ENST00000363216 104 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 SNORA38.1-201ENST00000364172 131 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 SNORA54-201ENST00000384281 123 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 MIR493-201ENST00000385254 89 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 RPL7P8-201ENST00000411964 730 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AL137014.1-201ENST00000420490 1226 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 BEND7P1-201ENST00000422058 457 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 MTCO2P5-201ENST00000422621 426 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AL445669.1-201ENST00000426743 755 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC090774.1-201ENST00000435925 246 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 RPS29P6-201ENST00000438196 145 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC004866.2-201ENST00000438285 481 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AL513043.1-201ENST00000439124 535 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 ARPC3P5-201ENST00000448802 534 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC034236.1-201ENST00000469891 373 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC103975.1-201ENST00000482506 483 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 RPL9P33-201ENST00000484311 566 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 TPT1P8-201ENST00000510120 555 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC109445.1-201ENST00000512356 383 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 RNU6-528P-201ENST00000516926 100 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 OR6C7P-201ENST00000547875 934 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 UBE2L4-201ENST00000587688 464 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AL109618.2-201ENST00000605527 211 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AL590099.1-201ENST00000615276 138 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AC002550.2-201ENST00000621246 394 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AL158801.5-201ENST00000623123 465 ntBASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC2.5□□□□□ -2.01
CCDC54Q8NEL0 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 RNU6-157P-201ENST00000383957 107 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 RNU2-43P-201ENST00000410306 190 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 RNU2-25P-201ENST00000411041 191 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AL513477.1-202ENST00000417061 214 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 MTND2P9-201ENST00000422293 931 ntBASIC2.49□□□□□ -2.01
CCDC54Q8NEL0 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms