Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 RNU4-51P-201ENST00000364206 140 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 SNORA46.1-201ENST00000391069 153 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 AL445669.1-201ENST00000426743 755 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 FO393414.1-201ENST00000428697 1184 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC1.3□□□□□ -2.2
TFF3Q07654 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC1.3□□□□□ -2.2
TFF3Q07654 AC080013.2-201ENST00000460866 323 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 HMGN1P8-201ENST00000463578 288 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.3□□□□□ -2.2
TFF3Q07654 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.3□□□□□ -2.2
TFF3Q07654 HMGN1P7-201ENST00000491722 313 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.3□□□□□ -2.2
TFF3Q07654 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.3□□□□□ -2.2
TFF3Q07654 MTCO3P44-201ENST00000510977 541 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC1.3□□□□□ -2.2
TFF3Q07654 RNU1-92P-201ENST00000517017 135 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 NDUFS5P6-201ENST00000529136 295 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.3□□□□□ -2.2
TFF3Q07654 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
TFF3Q07654 AC009127.3-201ENST00000570531 403 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.3□□□□□ -2.2
TFF3Q07654 AC020658.4-201ENST00000613987 684 ntBASIC1.3□□□□□ -2.2
TFF3Q07654 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.3□□□□□ -2.2
TFF3Q07654 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
TFF3Q07654 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
TFF3Q07654 MTND5P35-201ENST00000557537 1720 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 RNU6-1027P-201ENST00000383998 107 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 MIR607-201ENST00000385241 96 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 MIR524-201ENST00000385242 87 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 USP9YP6-201ENST00000413550 854 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.29□□□□□ -2.2
TFF3Q07654 AL354695.1-201ENST00000427935 228 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.29□□□□□ -2.2
TFF3Q07654 AL512661.1-201ENST00000434586 1253 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 USP9YP34-201ENST00000453983 808 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 snoU13.18-201ENST00000459483 104 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 AC104472.2-201ENST00000469035 601 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.29□□□□□ -2.2
TFF3Q07654 RNA5SP102-201ENST00000516865 106 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.29□□□□□ -2.2
TFF3Q07654 AC087373.1-201ENST00000524920 491 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 NBEAP1-201ENST00000554452 979 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 SNORD84-203ENST00000584275 78 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
TFF3Q07654 AC105429.2-201ENST00000610567 517 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 AL157834.3-201ENST00000615543 103 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 AL353770.2-201ENST00000620024 78 ntBASIC1.29□□□□□ -2.2
TFF3Q07654 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
TFF3Q07654 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.29□□□□□ -2.2
TFF3Q07654 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC1.29□□□□□ -2.2
TFF3Q07654 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
TFF3Q07654 Y_RNA.40-201ENST00000362645 93 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 RNU6-53P-201ENST00000365367 106 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 RNU6-1263P-201ENST00000384601 106 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 RNA5SP38-201ENST00000410750 119 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 RNU4-72P-201ENST00000410754 173 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC1.28□□□□□ -2.2
TFF3Q07654 RPL7P37-201ENST00000425095 738 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.28□□□□□ -2.2
TFF3Q07654 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.28□□□□□ -2.2
TFF3Q07654 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC1.28□□□□□ -2.2
TFF3Q07654 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC1.28□□□□□ -2.2
TFF3Q07654 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC1.28□□□□□ -2.2
TFF3Q07654 SETP7-201ENST00000552169 453 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.28□□□□□ -2.2
TFF3Q07654 SNORA4-201ENST00000584302 138 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 AC008749.1-201ENST00000597650 306 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
TFF3Q07654 U73479.1-201ENST00000618062 168 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC1.28□□□□□ -2.2
TFF3Q07654 MTCO1P4-201ENST00000520516 1409 ntBASIC1.28□□□□□ -2.2
TFF3Q07654 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
TFF3Q07654 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
TFF3Q07654 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.27□□□□□ -2.21
TFF3Q07654 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.27□□□□□ -2.21
TFF3Q07654 HMGB1P5-201ENST00000255320 642 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 SNRPEP2-201ENST00000397592 279 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.27□□□□□ -2.21
TFF3Q07654 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.27□□□□□ -2.21
TFF3Q07654 HMGN2P30-201ENST00000423237 256 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.27□□□□□ -2.21
TFF3Q07654 AC008427.1-201ENST00000503102 655 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 CASP1P1-201ENST00000526345 212 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.27□□□□□ -2.21
TFF3Q07654 UBE2L4-201ENST00000587688 464 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 AC008962.1-201ENST00000605729 304 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 AC245884.12-201ENST00000615364 59 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 uc_338.12-201ENST00000616344 181 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 AP003122.6-201ENST00000623831 495 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 AL359740.1-201ENST00000624340 592 ntBASIC1.27□□□□□ -2.21
TFF3Q07654 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
TFF3Q07654 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
TFF3Q07654 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.26□□□□□ -2.21
TFF3Q07654 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.26□□□□□ -2.21
TFF3Q07654 MTND4P27-201ENST00000450813 1354 ntBASIC1.26□□□□□ -2.21
TFF3Q07654 Y_RNA.191-201ENST00000363972 113 ntBASIC1.26□□□□□ -2.21
TFF3Q07654 RNY1P14-201ENST00000384426 108 ntBASIC1.26□□□□□ -2.21
TFF3Q07654 MIR320A-201ENST00000385302 82 ntBASIC1.26□□□□□ -2.21
TFF3Q07654 Z85995.1-201ENST00000415547 335 ntBASIC1.26□□□□□ -2.21
TFF3Q07654 RPL31P63-201ENST00000422565 375 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms