Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MTCO3P45-201ENST00000443036 613 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 PRPS1P1-201ENST00000445305 876 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA4Q00056 AC020550.1-201ENST00000447385 163 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 AL591623.2-201ENST00000449978 222 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA4Q00056 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA4Q00056 RN7SL98P-201ENST00000462271 300 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 RPL23AP11-201ENST00000475260 469 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 RPS27AP1-201ENST00000475545 471 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA4Q00056 RPL21P103-201ENST00000479921 488 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA4Q00056 AC108078.2-201ENST00000510750 236 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 Y_RNA.691-201ENST00000516611 103 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA4Q00056 MTND4P7-201ENST00000523876 130 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 AP000827.1-201ENST00000527814 258 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 DEFB109D-201ENST00000529497 240 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 HIGD1AP5-201ENST00000529959 259 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA4Q00056 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA4Q00056 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA4Q00056 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA4Q00056 AC113139.1-201ENST00000605049 239 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 AC010680.4-201ENST00000605334 543 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 ARF4P1-201ENST00000605447 541 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 AL133255.1-201ENST00000606374 441 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 uc_338.34-201ENST00000617467 174 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 AL589994.2-201ENST00000621124 579 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 AC110801.1-201ENST00000623590 212 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA4Q00056 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA4Q00056 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA4Q00056 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.67□□□□□ -1.82
HOXA4Q00056 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
HOXA4Q00056 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 MAPK10-304ENST00000641341 3984 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
HOXA4Q00056 FAM91A3P-201ENST00000456826 2544 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA4Q00056 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA4Q00056 AP001486.2-201ENST00000561652 5113 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AL158163.1-201ENST00000603915 1649 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA4Q00056 AL049555.1-201ENST00000562834 1933 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA4Q00056 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HOXA4Q00056 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA4Q00056 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HOXA4Q00056 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA4Q00056 OR5P1P-201ENST00000299512 925 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 RNU6-1287P-201ENST00000362914 107 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 Y_RNA.167-201ENST00000363735 109 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 RNA5SP509-201ENST00000364577 119 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 Y_RNA.301-201ENST00000364990 103 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA4Q00056 RNU6-946P-201ENST00000383878 107 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 RNU6-701P-201ENST00000384059 107 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 RNU6-1060P-201ENST00000384664 107 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 SNORD66.1-201ENST00000391230 76 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AL359634.1-202ENST00000404721 284 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 RPL30P2-201ENST00000414021 291 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA4Q00056 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 AL137014.1-201ENST00000420490 1226 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 RAC1P6-201ENST00000423911 575 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 RPS29P17-201ENST00000430795 166 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 AC004866.2-201ENST00000438285 481 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 H2AFZP6-201ENST00000444403 394 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 RPS11P1-201ENST00000451072 473 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 Y_RNA.632-201ENST00000459189 102 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 MTND4P17-201ENST00000470444 350 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 HMGN1P10-201ENST00000474557 553 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AC026979.1-201ENST00000492525 396 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA4Q00056 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 AC009643.1-201ENST00000532030 391 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA4Q00056 ATP5J2P6-201ENST00000565203 266 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AC008521.1-201ENST00000587471 187 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 RPL7P50-201ENST00000600588 727 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AC079587.1-201ENST00000603846 277 ntBASIC3.66□□□□□ -1.82
HOXA4Q00056 AC005034.5-201ENST00000604219 466 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms