Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL161423.1-201ENST00000613700 262 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 MIR6817-201ENST00000615588 66 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA3P55318 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
FOXA3P55318 AC010872.1-201ENST00000624225 675 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 VPS8-228ENST00000628962 207 ntTSL 5 BASIC1.56□□□□□ -2.16
FOXA3P55318 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC1.56□□□□□ -2.16
FOXA3P55318 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC1.56□□□□□ -2.16
FOXA3P55318 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
FOXA3P55318 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
FOXA3P55318 RNU6-1155P-201ENST00000363554 107 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 RNU6-525P-201ENST00000363685 104 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 ATP5F1P6-201ENST00000402768 767 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC1.55□□□□□ -2.16
FOXA3P55318 PTP4A1P7-201ENST00000423476 514 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 AL451062.2-201ENST00000427515 271 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 USP9YP8-201ENST00000441913 500 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 CABYRP1-201ENST00000465493 1045 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC1.55□□□□□ -2.16
FOXA3P55318 RN7SL636P-201ENST00000497504 294 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 RN7SKP31-201ENST00000516354 278 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 SCARNA11.3-201ENST00000517276 130 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.55□□□□□ -2.16
FOXA3P55318 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.55□□□□□ -2.16
FOXA3P55318 MIR4319-201ENST00000577285 85 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 AL033523.1-201ENST00000605153 153 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 AL450336.1-201ENST00000605180 586 ntBASIC1.55□□□□□ -2.16
FOXA3P55318 DLD-214ENST00000639772 421 ntTSL 5 BASIC1.55□□□□□ -2.16
FOXA3P55318 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
FOXA3P55318 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
FOXA3P55318 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
FOXA3P55318 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.55□□□□□ -2.16
FOXA3P55318 NUP58P1-201ENST00000502546 1738 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
FOXA3P55318 DEFB108F-201ENST00000344638 222 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 RNU6-1339P-201ENST00000363574 91 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA3P55318 SNORA48.2-201ENST00000390926 124 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AL023807.1-201ENST00000407932 359 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 RNA5SP489-201ENST00000410986 109 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AL030996.1-201ENST00000411430 235 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC1.54□□□□□ -2.16
FOXA3P55318 RPP40P1-201ENST00000426762 456 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AC012497.1-201ENST00000429392 575 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC1.54□□□□□ -2.16
FOXA3P55318 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA3P55318 AC025750.2-201ENST00000442609 450 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.54□□□□□ -2.16
FOXA3P55318 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA3P55318 RPS3P1-201ENST00000456781 192 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA3P55318 PABPC1P3-201ENST00000469174 459 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 RPL31P60-201ENST00000478450 367 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA3P55318 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA3P55318 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA3P55318 DEFB108D-201ENST00000527787 222 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.54□□□□□ -2.16
FOXA3P55318 LSM6P2-201ENST00000552208 177 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AC027104.1-201ENST00000563702 681 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AC078899.2-201ENST00000595282 212 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AL137246.1-201ENST00000607072 977 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AL627230.6-201ENST00000611129 280 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AC009318.4-201ENST00000620496 486 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
FOXA3P55318 OR5H6-203ENST00000642105 978 ntBASIC1.54□□□□□ -2.16
FOXA3P55318 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.54□□□□□ -2.16
FOXA3P55318 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.54□□□□□ -2.16
FOXA3P55318 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
FOXA3P55318 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC1.54□□□□□ -2.16
FOXA3P55318 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
FOXA3P55318 RNU6-7-201ENST00000364784 107 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 RNU6-8-201ENST00000365467 107 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 SNORD82-201ENST00000365530 70 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 RNU6-882P-201ENST00000391025 103 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.53□□□□□ -2.16
FOXA3P55318 NPM1P10-201ENST00000398310 865 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 TAF9BP2-201ENST00000400856 499 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 AL139413.1-201ENST00000421309 217 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 AL451074.3-201ENST00000437709 472 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.53□□□□□ -2.16
FOXA3P55318 AL354685.2-201ENST00000448218 1447 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
FOXA3P55318 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.53□□□□□ -2.16
FOXA3P55318 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.53□□□□□ -2.16
FOXA3P55318 AC096571.1-202ENST00000506634 735 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 AC022447.3-201ENST00000506865 495 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 RNA5SP281-201ENST00000516504 135 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 RNU2-44P-201ENST00000516795 194 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC1.53□□□□□ -2.16
FOXA3P55318 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC1.53□□□□□ -2.16
FOXA3P55318 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC1.53□□□□□ -2.16
FOXA3P55318 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC1.53□□□□□ -2.16
FOXA3P55318 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.53□□□□□ -2.16
FOXA3P55318 SNRPGP18-201ENST00000553000 214 ntBASIC1.53□□□□□ -2.16
FOXA3P55318 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC1.53□□□□□ -2.16
FOXA3P55318 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.53□□□□□ -2.16
FOXA3P55318 AC135628.1-201ENST00000568867 534 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 143.7 ms