Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU6-1155P-201ENST00000363554 107 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 Y_RNA.256-201ENST00000364594 104 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 RNA5SP505-201ENST00000364748 108 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 RNU6-1283P-201ENST00000365314 105 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 DYNLT3P1-201ENST00000378574 347 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 RNU6-398P-201ENST00000384143 109 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 RNU6-456P-201ENST00000384493 107 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 MIR937-201ENST00000401271 86 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 RN7SKP159-201ENST00000410657 292 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 SNORA57.3-201ENST00000411095 141 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 RNU6-516P-201ENST00000411381 104 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA1P49639 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA1P49639 NDUFB4P5-201ENST00000415445 361 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 MTCO3P12-201ENST00000416718 547 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 ISCA1P1-201ENST00000426679 387 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA1P49639 DPPA2P1-201ENST00000428060 556 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 ELOCP14-201ENST00000428070 331 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 DNAJC19P7-201ENST00000428811 344 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AC068287.1-201ENST00000430283 295 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 RPS29P17-201ENST00000430795 166 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA1P49639 RPL23AP69-201ENST00000431134 458 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AC009969.1-201ENST00000438726 172 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 ELOCP7-201ENST00000439968 331 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA1P49639 AL359073.1-201ENST00000448036 403 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AC125238.1-201ENST00000448842 249 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA1P49639 AC234775.1-201ENST00000454247 670 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA1P49639 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA1P49639 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA1P49639 RNA5SP246-201ENST00000458909 119 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA1P49639 AL672167.3-201ENST00000465951 960 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 HMGB1P29-201ENST00000505659 499 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 ARL4AP2-201ENST00000507378 601 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA1P49639 SAP18P1-201ENST00000512058 390 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 SCARNA24.1-201ENST00000516465 137 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AC008489.1-201ENST00000524271 483 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 DEFB108D-201ENST00000527787 222 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXA1P49639 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXA1P49639 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA1P49639 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HOXA1P49639 AC011602.1-201ENST00000546484 331 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA1P49639 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA1P49639 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA1P49639 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA1P49639 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXA1P49639 AC234778.2-201ENST00000566241 354 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA1P49639 MIR4284-201ENST00000578924 81 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA1P49639 AL356218.2-201ENST00000605264 187 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AP001596.2-201ENST00000608410 312 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 TUG1_1.1-201ENST00000610654 145 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 MIR6820-201ENST00000611508 62 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AC007014.2-201ENST00000615581 479 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA1P49639 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA1P49639 MTCO1P9-201ENST00000505577 1534 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
HOXA1P49639 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA1P49639 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA1P49639 UBE3AP2-201ENST00000429033 2259 ntBASIC3.22□□□□□ -1.89
HOXA1P49639 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.89
HOXA1P49639 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
HOXA1P49639 AL645937.1-201ENST00000641739 1652 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA1P49639 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.21□□□□□ -1.9
HOXA1P49639 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXA1P49639 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA1P49639 RNA5SP447-201ENST00000363749 119 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
HOXA1P49639 RNU6-837P-201ENST00000391056 108 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 RPS3AP24-201ENST00000407896 734 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 RNU2-8P-201ENST00000410727 190 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA1P49639 UBE2FP1-201ENST00000416536 447 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AL137014.1-201ENST00000420490 1226 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA1P49639 AC244098.2-201ENST00000422068 99 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC009480.2-201ENST00000422916 432 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.21□□□□□ -1.9
HOXA1P49639 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
HOXA1P49639 AC093106.2-201ENST00000428212 385 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA1P49639 AL358472.1-201ENST00000431295 329 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 KCTD9P3-201ENST00000434597 1169 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 RPS11P1-201ENST00000451072 473 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC027673.1-201ENST00000456245 405 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA1P49639 AC091179.1-201ENST00000461606 579 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC010401.1-201ENST00000463867 348 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms