Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.26□□□□□ -1.73
MSX2P35548 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
MSX2P35548 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.26□□□□□ -1.73
MSX2P35548 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
MSX2P35548 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
MSX2P35548 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSX2P35548 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
MSX2P35548 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
MSX2P35548 AC121333.1-201ENST00000567488 2709 ntBASIC4.25□□□□□ -1.73
MSX2P35548 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
MSX2P35548 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
MSX2P35548 AC244517.1-201ENST00000606030 2086 ntBASIC4.25□□□□□ -1.73
MSX2P35548 ZFRP1-201ENST00000457579 2970 ntBASIC4.25□□□□□ -1.73
MSX2P35548 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
MSX2P35548 Y_RNA.187-201ENST00000363918 113 ntBASIC4.25□□□□□ -1.73
MSX2P35548 U3.29-201ENST00000391296 212 ntBASIC4.25□□□□□ -1.73
MSX2P35548 UBE2V1P2-201ENST00000397758 440 ntBASIC4.25□□□□□ -1.73
MSX2P35548 RN7SKP213-201ENST00000410746 298 ntBASIC4.25□□□□□ -1.73
MSX2P35548 RNU6-370P-201ENST00000411008 104 ntBASIC4.25□□□□□ -1.73
MSX2P35548 HMGN1P24-201ENST00000412282 298 ntBASIC4.25□□□□□ -1.73
MSX2P35548 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.25□□□□□ -1.73
MSX2P35548 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.25□□□□□ -1.73
MSX2P35548 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.25□□□□□ -1.73
MSX2P35548 AL590762.4-201ENST00000425885 253 ntBASIC4.25□□□□□ -1.73
MSX2P35548 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.25□□□□□ -1.73
MSX2P35548 CEACAMP7-201ENST00000444105 496 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AC016696.1-201ENST00000446949 318 ntBASIC4.25□□□□□ -1.73
MSX2P35548 TPT1P13-201ENST00000449760 499 ntBASIC4.25□□□□□ -1.73
MSX2P35548 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AC107399.1-201ENST00000451226 265 ntBASIC4.25□□□□□ -1.73
MSX2P35548 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.25□□□□□ -1.73
MSX2P35548 AC091685.2-201ENST00000454924 864 ntBASIC4.25□□□□□ -1.73
MSX2P35548 RPS5P7-201ENST00000456664 608 ntBASIC4.25□□□□□ -1.73
MSX2P35548 SNRPFP3-201ENST00000457792 225 ntBASIC4.25□□□□□ -1.73
MSX2P35548 MTND5P22-201ENST00000458380 195 ntBASIC4.25□□□□□ -1.73
MSX2P35548 RNU7-59P-201ENST00000459101 61 ntBASIC4.25□□□□□ -1.73
MSX2P35548 Y_RNA.654-201ENST00000497848 106 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AC083829.1-201ENST00000503756 657 ntBASIC4.25□□□□□ -1.73
MSX2P35548 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
MSX2P35548 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.25□□□□□ -1.73
MSX2P35548 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.25□□□□□ -1.73
MSX2P35548 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
MSX2P35548 AC108043.1-201ENST00000512696 574 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AC005798.1-201ENST00000513715 387 ntBASIC4.25□□□□□ -1.73
MSX2P35548 RN7SKP147-201ENST00000517154 244 ntBASIC4.25□□□□□ -1.73
MSX2P35548 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
MSX2P35548 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
MSX2P35548 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.25□□□□□ -1.73
MSX2P35548 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.25□□□□□ -1.73
MSX2P35548 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.25□□□□□ -1.73
MSX2P35548 AL133153.1-201ENST00000557756 303 ntBASIC4.25□□□□□ -1.73
MSX2P35548 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.25□□□□□ -1.73
MSX2P35548 MIR3691-201ENST00000578066 90 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.25□□□□□ -1.73
MSX2P35548 AC024619.4-201ENST00000580924 316 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.25□□□□□ -1.73
MSX2P35548 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.25□□□□□ -1.73
MSX2P35548 XIAPP1-201ENST00000603162 600 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AL670379.11-201ENST00000604059 253 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AC025588.3-201ENST00000604182 274 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AL670379.10-201ENST00000604330 253 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AL670379.12-201ENST00000605291 253 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AL670379.9-201ENST00000605428 253 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AL390240.1-201ENST00000612950 384 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AL132822.1-201ENST00000617063 513 ntBASIC4.25□□□□□ -1.73
MSX2P35548 7SK.10-201ENST00000621414 298 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AC007546.2-201ENST00000623996 360 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AL136313.1-201ENST00000624804 202 ntBASIC4.25□□□□□ -1.73
MSX2P35548 AL078596.1-201ENST00000624856 447 ntBASIC4.25□□□□□ -1.73
MSX2P35548 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
MSX2P35548 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.25□□□□□ -1.73
MSX2P35548 PABPC1P7-201ENST00000413177 1513 ntBASIC4.25□□□□□ -1.73
MSX2P35548 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
MSX2P35548 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.25□□□□□ -1.73
MSX2P35548 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
MSX2P35548 AL133243.3-201ENST00000617415 3004 ntBASIC4.24□□□□□ -1.73
MSX2P35548 MTCO1P24-201ENST00000515438 1558 ntBASIC4.24□□□□□ -1.73
MSX2P35548 RNA5SP191-201ENST00000362585 102 ntBASIC4.24□□□□□ -1.73
MSX2P35548 RNU6-356P-201ENST00000384140 107 ntBASIC4.24□□□□□ -1.73
MSX2P35548 RNU6-574P-201ENST00000384265 107 ntBASIC4.24□□□□□ -1.73
MSX2P35548 RNU1-106P-201ENST00000384382 164 ntBASIC4.24□□□□□ -1.73
MSX2P35548 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
MSX2P35548 RNU6-308P-201ENST00000390957 107 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AL356057.3-201ENST00000402607 340 ntBASIC4.24□□□□□ -1.73
MSX2P35548 RNU2-36P-201ENST00000410361 191 ntBASIC4.24□□□□□ -1.73
MSX2P35548 RNA5SP39-201ENST00000411245 120 ntBASIC4.24□□□□□ -1.73
MSX2P35548 RPL37P18-201ENST00000411602 243 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AC140479.3-201ENST00000418944 1126 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX2P35548 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX2P35548 AL359265.2-201ENST00000434367 631 ntBASIC4.24□□□□□ -1.73
MSX2P35548 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX2P35548 AL137792.2-201ENST00000443484 235 ntBASIC4.24□□□□□ -1.73
MSX2P35548 RPL21P133-201ENST00000443666 476 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.24□□□□□ -1.73
MSX2P35548 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.24□□□□□ -1.73
MSX2P35548 PPIAP3-201ENST00000450588 505 ntBASIC4.24□□□□□ -1.73
MSX2P35548 SCARNA10-201ENST00000459255 330 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms