Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SMARCA1P28370 AL138713.1-201ENST00000624026 2130 ntBASIC4.39□□□□□ -1.71
SMARCA1P28370 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
SMARCA1P28370 MAPK10-373ENST00000641983 6772 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AC004520.1-201ENST00000608362 1413 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SMARCA1P28370 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.38□□□□□ -1.71
SMARCA1P28370 Y_RNA.9-201ENST00000362354 101 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 Y_RNA.159-201ENST00000363674 87 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.38□□□□□ -1.71
SMARCA1P28370 SNORA20.2-201ENST00000383922 131 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AL138878.1-201ENST00000405131 347 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 RN7SKP202-201ENST00000410439 330 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.38□□□□□ -1.71
SMARCA1P28370 OR1AA1P-201ENST00000419597 916 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 TIMM9P3-201ENST00000428659 274 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
SMARCA1P28370 NOTCH2P1-201ENST00000443481 624 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AL136380.1-201ENST00000447970 162 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 TPT1P14-201ENST00000448018 505 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 ST13P14-201ENST00000474095 734 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AC116353.2-201ENST00000505332 712 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.38□□□□□ -1.71
SMARCA1P28370 AC005921.1-201ENST00000510589 286 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 RAC1P2-201ENST00000511164 579 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.38□□□□□ -1.71
SMARCA1P28370 OR5AQ1P-201ENST00000527596 927 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.38□□□□□ -1.71
SMARCA1P28370 OR4T1P-201ENST00000554933 911 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.38□□□□□ -1.71
SMARCA1P28370 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.38□□□□□ -1.71
SMARCA1P28370 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.38□□□□□ -1.71
SMARCA1P28370 KC877982.1-201ENST00000602313 470 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AC012669.1-201ENST00000603209 283 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AL136363.1-201ENST00000605349 337 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.38□□□□□ -1.71
SMARCA1P28370 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.38□□□□□ -1.71
SMARCA1P28370 AC079684.1-201ENST00000621405 437 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 AC244258.1-201ENST00000637553 1071 ntBASIC4.38□□□□□ -1.71
SMARCA1P28370 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SMARCA1P28370 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SMARCA1P28370 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SMARCA1P28370 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SMARCA1P28370 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.37□□□□□ -1.71
SMARCA1P28370 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SMARCA1P28370 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
SMARCA1P28370 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.37□□□□□ -1.71
SMARCA1P28370 SNORA7.2-201ENST00000364446 145 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.37□□□□□ -1.71
SMARCA1P28370 RNU6-629P-201ENST00000384061 103 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SMARCA1P28370 RPL7P60-201ENST00000397636 735 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 RNU6-712P-201ENST00000410558 100 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.37□□□□□ -1.71
SMARCA1P28370 RPS7P15-201ENST00000415804 584 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 AL353193.1-201ENST00000421444 268 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 AC119618.1-201ENST00000434191 222 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.37□□□□□ -1.71
SMARCA1P28370 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.37□□□□□ -1.71
SMARCA1P28370 MTATP6P30-201ENST00000443540 664 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.37□□□□□ -1.71
SMARCA1P28370 AC027673.1-201ENST00000456245 405 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.37□□□□□ -1.71
SMARCA1P28370 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.37□□□□□ -1.71
SMARCA1P28370 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.37□□□□□ -1.71
SMARCA1P28370 Y_RNA.704-201ENST00000516851 102 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 RNU6-798P-201ENST00000516912 103 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.37□□□□□ -1.71
SMARCA1P28370 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.37□□□□□ -1.71
SMARCA1P28370 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SMARCA1P28370 AL133271.1-201ENST00000538229 291 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.37□□□□□ -1.71
SMARCA1P28370 CR383656.7-201ENST00000548164 174 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 HMGB1P33-201ENST00000563485 527 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 SNORA59B-202ENST00000578183 701 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.37□□□□□ -1.71
SMARCA1P28370 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.37□□□□□ -1.71
SMARCA1P28370 AC020914.4-201ENST00000597690 277 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 AC017083.3-201ENST00000609955 700 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 AC245517.5-201ENST00000611529 162 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 AL355073.2-201ENST00000612106 557 ntBASIC4.37□□□□□ -1.71
SMARCA1P28370 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.37□□□□□ -1.71
SMARCA1P28370 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.37□□□□□ -1.71
SMARCA1P28370 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
SMARCA1P28370 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SMARCA1P28370 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.37□□□□□ -1.71
SMARCA1P28370 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
SMARCA1P28370 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.37□□□□□ -1.71
SMARCA1P28370 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SMARCA1P28370 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SMARCA1P28370 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SMARCA1P28370 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.36□□□□□ -1.71
SMARCA1P28370 AL365440.1-201ENST00000436135 2167 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SMARCA1P28370 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.36□□□□□ -1.71
SMARCA1P28370 RNY4P14-201ENST00000363656 96 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 RNU6-1090P-201ENST00000364065 94 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 U8.11-201ENST00000384699 133 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 U8.12-201ENST00000384701 133 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 139.6 ms