Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC243654.2-201ENST00000612843 443 ntBASIC4.93□□□□□ -1.62
COL8A1P27658 U1.25-201ENST00000614085 162 ntBASIC4.93□□□□□ -1.62
COL8A1P27658 SNORD39.4-201ENST00000620099 78 ntBASIC4.93□□□□□ -1.62
COL8A1P27658 AC009951.1-201ENST00000623674 2614 ntBASIC4.93□□□□□ -1.62
COL8A1P27658 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL8A1P27658 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL8A1P27658 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.93□□□□□ -1.62
COL8A1P27658 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL8A1P27658 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC4.93□□□□□ -1.62
COL8A1P27658 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC4.93□□□□□ -1.62
COL8A1P27658 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL8A1P27658 AC015799.1-201ENST00000622996 3122 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 RAD17P1-201ENST00000418130 2042 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
COL8A1P27658 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
COL8A1P27658 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 ZNF826P-207ENST00000622273 1910 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
COL8A1P27658 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 RNU6-312P-201ENST00000364629 107 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 AL357075.1-201ENST00000404107 726 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 U3.36-201ENST00000408418 213 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 AL590399.2-201ENST00000427536 309 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.92□□□□□ -1.62
COL8A1P27658 AL663074.2-201ENST00000440621 479 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.92□□□□□ -1.62
COL8A1P27658 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.92□□□□□ -1.62
COL8A1P27658 ACA64.4-201ENST00000459070 127 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 RN7SL352P-201ENST00000466002 277 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC4.92□□□□□ -1.62
COL8A1P27658 RPL30P11-201ENST00000495304 339 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.92□□□□□ -1.62
COL8A1P27658 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.92□□□□□ -1.62
COL8A1P27658 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.92□□□□□ -1.62
COL8A1P27658 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.92□□□□□ -1.62
COL8A1P27658 AC114947.2-201ENST00000565748 2125 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC4.92□□□□□ -1.62
COL8A1P27658 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.92□□□□□ -1.62
COL8A1P27658 MIR548X2-201ENST00000579776 100 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 LRRC37A5P-203ENST00000580181 585 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.92□□□□□ -1.62
COL8A1P27658 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.92□□□□□ -1.62
COL8A1P27658 BRDTP1-201ENST00000605735 677 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.92□□□□□ -1.62
COL8A1P27658 AC083809.1-201ENST00000615051 472 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.92□□□□□ -1.62
COL8A1P27658 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC4.92□□□□□ -1.62
COL8A1P27658 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 AC004158.1-201ENST00000564508 4319 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL8A1P27658 AL031119.1-201ENST00000404707 1879 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 AL391516.1-201ENST00000554380 2449 ntBASIC4.92□□□□□ -1.62
COL8A1P27658 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL8A1P27658 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL8A1P27658 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC4.91□□□□□ -1.62
COL8A1P27658 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 AC110373.1-201ENST00000505994 3505 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.91□□□□□ -1.62
COL8A1P27658 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
COL8A1P27658 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL8A1P27658 RPL9P7-201ENST00000330965 580 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 RNU6-151P-201ENST00000364158 107 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 RNU4-84P-201ENST00000364200 139 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 Y_RNA.262-201ENST00000364641 102 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 Y_RNA.309-201ENST00000365046 111 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 RNU6-1289P-201ENST00000384431 106 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 MIR521-1-201ENST00000384902 87 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 MIR192-201ENST00000384915 110 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
COL8A1P27658 RNY4P18-201ENST00000391107 89 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 U3.35-201ENST00000408405 208 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.91□□□□□ -1.62
COL8A1P27658 RNU4-65P-201ENST00000410473 140 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 AL354868.1-201ENST00000417077 482 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 OOSP1P1-201ENST00000423265 274 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC4.91□□□□□ -1.62
COL8A1P27658 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.91□□□□□ -1.62
COL8A1P27658 AL513043.1-201ENST00000439124 535 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 Z95327.1-201ENST00000446082 482 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 AL356981.1-201ENST00000454879 684 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 AC112187.1-201ENST00000455837 479 ntBASIC4.91□□□□□ -1.62
COL8A1P27658 AC010631.1-201ENST00000474150 156 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms