Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC2.11□□□□□ -2.07
COL5A3P25940 ZNF92P3-201ENST00000596594 954 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AC139769.3-201ENST00000618383 175 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AC080188.3-201ENST00000624842 748 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 MTCO1P6-201ENST00000481192 1384 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
COL5A3P25940 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
COL5A3P25940 RNU6-31P-201ENST00000384388 108 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AL451074.3-201ENST00000437709 472 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.11□□□□□ -2.07
COL5A3P25940 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.11□□□□□ -2.07
COL5A3P25940 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
COL5A3P25940 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.11□□□□□ -2.07
COL5A3P25940 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.11□□□□□ -2.07
COL5A3P25940 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.11□□□□□ -2.07
COL5A3P25940 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.11□□□□□ -2.07
COL5A3P25940 HMGB1P46-201ENST00000520062 610 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC2.11□□□□□ -2.07
COL5A3P25940 MIR3908-201ENST00000579798 126 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AP001542.2-201ENST00000593141 364 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AC113368.1-201ENST00000603736 382 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 RNA5SP108-201ENST00000605921 117 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AC110792.4-201ENST00000609843 298 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 AC084824.5-201ENST00000612009 413 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 RMST_2.1-201ENST00000617263 136 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 FO624990.1-201ENST00000636373 85 ntBASIC2.11□□□□□ -2.07
COL5A3P25940 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
COL5A3P25940 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
COL5A3P25940 RNU6-392P-201ENST00000364926 101 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 RNU6-53P-201ENST00000365367 106 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 RNU1-57P-201ENST00000384491 166 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 USP9YP6-201ENST00000413550 854 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 USP9YP27-201ENST00000418455 438 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.1□□□□□ -2.07
COL5A3P25940 RPL30P3-201ENST00000424262 333 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 ARPC3P1-201ENST00000437218 533 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 DNAJC19P4-201ENST00000440115 345 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 MOB1AP2-201ENST00000446060 614 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 USP9YP34-201ENST00000453983 808 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 AIG1P1-201ENST00000503376 148 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC2.1□□□□□ -2.07
COL5A3P25940 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC2.1□□□□□ -2.07
COL5A3P25940 AC109464.2-201ENST00000510242 943 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC2.1□□□□□ -2.07
COL5A3P25940 AC233266.2-201ENST00000567067 528 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 RMST_6.1-201ENST00000611980 203 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 MIR6504-201ENST00000613520 61 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
COL5A3P25940 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
COL5A3P25940 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.1□□□□□ -2.07
COL5A3P25940 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
COL5A3P25940 ZNF876P-202ENST00000398732 1485 ntBASIC2.1□□□□□ -2.07
COL5A3P25940 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
COL5A3P25940 Y_RNA.374-201ENST00000365606 101 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 PTGES3P2-201ENST00000407942 482 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 AC109780.2-201ENST00000413467 845 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 SUMO1P4-201ENST00000429430 302 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 HMGB1P26-201ENST00000452520 628 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
COL5A3P25940 AC008628.1-201ENST00000508663 265 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC2.09□□□□□ -2.07
COL5A3P25940 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC2.09□□□□□ -2.07
COL5A3P25940 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.09□□□□□ -2.07
COL5A3P25940 AC025918.2-201ENST00000558683 763 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC2.09□□□□□ -2.07
COL5A3P25940 AL671309.1-201ENST00000603750 544 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
COL5A3P25940 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.09□□□□□ -2.07
COL5A3P25940 AP003072.4-201ENST00000624580 310 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 AL356094.1-201ENST00000624663 1212 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 AP000720.1-201ENST00000625091 483 ntBASIC2.09□□□□□ -2.07
COL5A3P25940 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
COL5A3P25940 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.09□□□□□ -2.07
COL5A3P25940 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
COL5A3P25940 SNORA16.1-201ENST00000364597 132 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 RNU6-707P-201ENST00000364647 95 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 SNORD51.1-201ENST00000365405 77 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 Z98749.2-208ENST00000381646 500 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 MIR613-201ENST00000385248 95 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
COL5A3P25940 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.08□□□□□ -2.08
COL5A3P25940 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC2.08□□□□□ -2.08
COL5A3P25940 POLR2J4-204ENST00000418424 324 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 BX510359.4-201ENST00000423750 193 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 RPL7P37-201ENST00000425095 738 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 ELOCP6-201ENST00000429066 328 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 HMGB1P27-201ENST00000431429 603 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 RPL17P35-201ENST00000432217 549 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.08□□□□□ -2.08
COL5A3P25940 AC009238.1-201ENST00000442165 424 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 AC009237.6-201ENST00000446969 424 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.08□□□□□ -2.08
COL5A3P25940 ELOCP12-201ENST00000458706 328 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 RPL21P39-201ENST00000463605 483 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 RPL21P103-201ENST00000479921 488 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC2.08□□□□□ -2.08
COL5A3P25940 AC079203.1-201ENST00000487972 404 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 AC025768.1-201ENST00000510057 267 ntBASIC2.08□□□□□ -2.08
COL5A3P25940 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC2.08□□□□□ -2.08
COL5A3P25940 SETP2-201ENST00000553886 926 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms