Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 FAM91A3P-201ENST00000456826 2544 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A1P12109 RPL7P26-201ENST00000333817 754 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 RNA5SP175-201ENST00000364275 119 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 Y_RNA.255-201ENST00000364581 97 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 RNY4P16-201ENST00000364768 94 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 RNU6-1181P-201ENST00000384191 106 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
COL6A1P12109 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.75□□□□□ -1.65
COL6A1P12109 AL136116.1-201ENST00000403591 381 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AL592291.1-201ENST00000403830 352 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A1P12109 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A1P12109 RPL21P91-201ENST00000429231 479 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.75□□□□□ -1.65
COL6A1P12109 RPL23AP30-201ENST00000432419 501 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 IFNA20P-201ENST00000436840 528 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 RPS26P2-201ENST00000440331 348 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A1P12109 AL356010.1-201ENST00000456364 102 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 RNA5SP246-201ENST00000458909 119 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 MRPS17P3-201ENST00000465453 385 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AC078785.3-201ENST00000476607 425 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AC233702.1-201ENST00000482905 502 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 RPS15AP36-201ENST00000492022 382 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AC104164.2-201ENST00000496953 495 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A1P12109 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.75□□□□□ -1.65
COL6A1P12109 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A1P12109 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A1P12109 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A1P12109 AC093677.1-201ENST00000514414 678 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 RNA5SP309-201ENST00000516670 106 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AC008694.2-201ENST00000517591 306 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 BTF3P12-201ENST00000519620 469 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AP003497.1-201ENST00000528472 562 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A1P12109 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A1P12109 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A1P12109 AL352979.3-201ENST00000553515 247 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A1P12109 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AC113139.1-201ENST00000605049 239 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.75□□□□□ -1.65
COL6A1P12109 AL133215.3-201ENST00000609801 448 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AL355472.4-201ENST00000610233 626 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 AC130324.3-201ENST00000614165 542 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 uc_338.32-201ENST00000615087 172 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 MTND4P27-201ENST00000450813 1354 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A1P12109 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A1P12109 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A1P12109 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A1P12109 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.74□□□□□ -1.65
COL6A1P12109 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A1P12109 RNU1-20P-201ENST00000363314 162 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 RNU6-335P-201ENST00000364563 113 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
COL6A1P12109 Y_RNA.474-201ENST00000384341 102 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 RPL7P60-201ENST00000397636 735 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 AL591416.1-201ENST00000404015 867 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 SRIP2-201ENST00000428470 166 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.74□□□□□ -1.65
COL6A1P12109 RPL23AP25-201ENST00000430973 463 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A1P12109 RPS3AP12-201ENST00000443616 753 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC4.74□□□□□ -1.65
COL6A1P12109 AC104073.1-201ENST00000451988 151 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.74□□□□□ -1.65
COL6A1P12109 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.74□□□□□ -1.65
COL6A1P12109 AC096576.1-201ENST00000489014 359 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.74□□□□□ -1.65
COL6A1P12109 EIF4EP3-201ENST00000498782 656 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.74□□□□□ -1.65
COL6A1P12109 SNORA74D-201ENST00000516404 141 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 AC107953.1-201ENST00000522216 297 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC4.74□□□□□ -1.65
COL6A1P12109 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A1P12109 BNIP3P6-201ENST00000549284 499 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.74□□□□□ -1.65
COL6A1P12109 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.74□□□□□ -1.65
COL6A1P12109 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.74□□□□□ -1.65
COL6A1P12109 MIR3146-201ENST00000580367 79 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 MIR3200-201ENST00000580767 85 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A1P12109 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A1P12109 AC068790.3-201ENST00000602988 553 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 AC090617.10-201ENST00000624308 134 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC4.74□□□□□ -1.65
COL6A1P12109 AC006020.1-201ENST00000420179 1854 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 NXPH1-205ENST00000602349 1953 ntBASIC4.74□□□□□ -1.65
COL6A1P12109 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A1P12109 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.74□□□□□ -1.65
COL6A1P12109 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A1P12109 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A1P12109 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A1P12109 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A1P12109 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms