Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC098799.2-201ENST00000509466 868 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4BO75351 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.11□□□□□ -1.75
VPS4BO75351 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4BO75351 DEFB108D-201ENST00000527787 222 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 OR4R1P-201ENST00000529879 463 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS4BO75351 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.11□□□□□ -1.75
VPS4BO75351 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS4BO75351 AC034105.3-201ENST00000565294 442 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 MIR4293-201ENST00000584305 78 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS4BO75351 AC012669.1-201ENST00000603209 283 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 AC008739.3-201ENST00000603262 127 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 LLPHP1-201ENST00000603571 367 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 BNIP3P9-201ENST00000603714 553 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 AL031176.1-201ENST00000604554 466 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 Z84480.1-201ENST00000605131 311 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS4BO75351 AC064801.1-201ENST00000612025 407 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 AL603758.1-201ENST00000618654 241 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 MIR6130-201ENST00000619419 109 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 AL136964.1-201ENST00000622038 2990 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 AC024614.3-201ENST00000637860 256 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS4BO75351 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS4BO75351 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS4BO75351 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS4BO75351 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.11□□□□□ -1.75
VPS4BO75351 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS4BO75351 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4BO75351 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4BO75351 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VPS4BO75351 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 RNU5E-8P-201ENST00000363502 116 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 RNU6-1155P-201ENST00000363554 107 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 MIR200C-201ENST00000384980 68 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 SNORA3C-201ENST00000408792 125 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 RNA5SP306-201ENST00000411087 107 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 RNA5SP39-201ENST00000411245 120 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 RPL21P111-201ENST00000418453 477 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 AL139095.3-201ENST00000419672 1203 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 OR2AS1P-201ENST00000427827 319 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 OR4K11P-201ENST00000431829 904 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 SNRPEP8-201ENST00000442866 260 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 AC006480.1-201ENST00000449887 378 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 PPIAP3-201ENST00000450588 505 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 RPL36AP13-201ENST00000457490 317 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 AP000852.1-201ENST00000472460 573 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 PCBP2P3-201ENST00000509726 843 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 RNU2-10P-201ENST00000516375 211 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 AC103783.1-201ENST00000520506 373 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 AC100870.1-201ENST00000522035 505 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS4BO75351 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.1□□□□□ -1.75
VPS4BO75351 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS4BO75351 RPL21P12-201ENST00000559810 515 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.1□□□□□ -1.75
VPS4BO75351 AC005730.3-201ENST00000583067 366 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4BO75351 RMST_3.1-201ENST00000611651 109 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS4BO75351 AC104985.2-201ENST00000620598 500 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 AC244100.1-202ENST00000621554 382 ntBASIC4.1□□□□□ -1.75
VPS4BO75351 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4BO75351 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
VPS4BO75351 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4BO75351 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VPS4BO75351 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4BO75351 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.09□□□□□ -1.75
VPS4BO75351 AC006020.1-201ENST00000420179 1854 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS4BO75351 CBX3P1-201ENST00000325243 554 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 RNU6-223P-201ENST00000362830 107 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 Y_RNA.70-201ENST00000362886 110 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 Y_RNA.279-201ENST00000364763 95 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 Y_RNA.367-201ENST00000365544 101 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 RNU4-48P-201ENST00000365559 182 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 Y_RNA.381-201ENST00000365666 102 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
VPS4BO75351 RNU6-837P-201ENST00000391056 108 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 AL109755.1-201ENST00000401791 649 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 AL354719.1-201ENST00000406535 843 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 AL356776.1-201ENST00000406574 447 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 AL583834.1-201ENST00000406943 343 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 RNU2-9P-201ENST00000410194 145 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 RNA5SP239-201ENST00000410218 129 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 RNU4-78P-201ENST00000410940 126 ntBASIC4.09□□□□□ -1.75
VPS4BO75351 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms