Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-150P-201ENST00000516237 95 ntBASIC2.99□□□□□ -1.93
SDC3O75056 AC245166.1-201ENST00000521012 253 ntBASIC2.99□□□□□ -1.93
SDC3O75056 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
SDC3O75056 DEFB108D-201ENST00000527787 222 ntBASIC2.99□□□□□ -1.93
SDC3O75056 GTF3AP2-201ENST00000557014 266 ntBASIC2.99□□□□□ -1.93
SDC3O75056 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC2.99□□□□□ -1.93
SDC3O75056 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.99□□□□□ -1.93
SDC3O75056 AL596327.1-201ENST00000603629 213 ntBASIC2.99□□□□□ -1.93
SDC3O75056 AL133507.1-201ENST00000605269 557 ntBASIC2.99□□□□□ -1.93
SDC3O75056 AL158042.1-201ENST00000605338 460 ntBASIC2.99□□□□□ -1.93
SDC3O75056 AC004832.5-201ENST00000608677 401 ntBASIC2.99□□□□□ -1.93
SDC3O75056 AC011330.2-201ENST00000621680 635 ntBASIC2.99□□□□□ -1.93
SDC3O75056 MTND5P7-201ENST00000413558 1798 ntBASIC2.99□□□□□ -1.93
SDC3O75056 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
SDC3O75056 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC3O75056 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
SDC3O75056 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SDC3O75056 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
SDC3O75056 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.98□□□□□ -1.93
SDC3O75056 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.98□□□□□ -1.93
SDC3O75056 SNORA14A-201ENST00000364773 135 ntBASIC2.98□□□□□ -1.93
SDC3O75056 RNU6-359P-201ENST00000365466 108 ntBASIC2.98□□□□□ -1.93
SDC3O75056 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
SDC3O75056 RPL7P25-201ENST00000404151 721 ntBASIC2.98□□□□□ -1.93
SDC3O75056 RPS24P7-201ENST00000416921 246 ntBASIC2.98□□□□□ -1.93
SDC3O75056 CCDC58P2-201ENST00000417131 366 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AC006960.1-201ENST00000419980 153 ntBASIC2.98□□□□□ -1.93
SDC3O75056 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.98□□□□□ -1.93
SDC3O75056 AL139132.1-201ENST00000431587 344 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.98□□□□□ -1.93
SDC3O75056 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.98□□□□□ -1.93
SDC3O75056 SNRPEP7-201ENST00000438350 220 ntBASIC2.98□□□□□ -1.93
SDC3O75056 TRIM60P18-201ENST00000441518 828 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.98□□□□□ -1.93
SDC3O75056 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC3O75056 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC3O75056 AL031183.1-201ENST00000457667 207 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AL049714.1-201ENST00000466686 347 ntBASIC2.98□□□□□ -1.93
SDC3O75056 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.98□□□□□ -1.93
SDC3O75056 AC004924.1-201ENST00000480160 781 ntBASIC2.98□□□□□ -1.93
SDC3O75056 FAM172BP-201ENST00000487497 1089 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC3O75056 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC3O75056 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC2.98□□□□□ -1.93
SDC3O75056 AC111000.2-201ENST00000507775 550 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.98□□□□□ -1.93
SDC3O75056 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.98□□□□□ -1.93
SDC3O75056 OR6C7P-201ENST00000547875 934 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AC034105.3-201ENST00000565294 442 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.98□□□□□ -1.93
SDC3O75056 AC011260.1-201ENST00000578420 472 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.98□□□□□ -1.93
SDC3O75056 MIR4672-201ENST00000583126 81 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AC025588.2-201ENST00000604851 466 ntBASIC2.98□□□□□ -1.93
SDC3O75056 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.98□□□□□ -1.93
SDC3O75056 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.98□□□□□ -1.93
SDC3O75056 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
SDC3O75056 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.97□□□□□ -1.93
SDC3O75056 AC008264.2-201ENST00000610193 3731 ntBASIC2.97□□□□□ -1.93
SDC3O75056 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
SDC3O75056 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
SDC3O75056 AC008568.2-201ENST00000623862 2313 ntBASIC2.97□□□□□ -1.93
SDC3O75056 OR5J1P-201ENST00000313544 939 ntBASIC2.97□□□□□ -1.93
SDC3O75056 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC3O75056 SNORD113-6-201ENST00000363345 75 ntBASIC2.97□□□□□ -1.93
SDC3O75056 Y_RNA.234-201ENST00000364409 97 ntBASIC2.97□□□□□ -1.93
SDC3O75056 CD24P4-201ENST00000382840 243 ntBASIC2.97□□□□□ -1.93
SDC3O75056 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC3O75056 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC3O75056 MTCO2P21-201ENST00000419780 677 ntBASIC2.97□□□□□ -1.93
SDC3O75056 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC3O75056 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC3O75056 NDUFB4P6-201ENST00000436819 366 ntBASIC2.97□□□□□ -1.93
SDC3O75056 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.97□□□□□ -1.93
SDC3O75056 AC002381.1-201ENST00000447049 280 ntBASIC2.97□□□□□ -1.93
SDC3O75056 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC3O75056 snoU13.8-201ENST00000458890 104 ntBASIC2.97□□□□□ -1.93
SDC3O75056 MEMO1P3-201ENST00000459811 302 ntBASIC2.97□□□□□ -1.93
SDC3O75056 AC104563.1-201ENST00000476147 376 ntBASIC2.97□□□□□ -1.93
SDC3O75056 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.97□□□□□ -1.93
SDC3O75056 AC017037.2-201ENST00000513850 890 ntBASIC2.97□□□□□ -1.93
SDC3O75056 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.97□□□□□ -1.93
SDC3O75056 RNA5SP356-201ENST00000515972 94 ntBASIC2.97□□□□□ -1.93
SDC3O75056 RNA5SP216-201ENST00000516111 123 ntBASIC2.97□□□□□ -1.93
SDC3O75056 RN7SKP265-201ENST00000516448 223 ntBASIC2.97□□□□□ -1.93
SDC3O75056 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC3O75056 MTND1P24-201ENST00000552175 861 ntBASIC2.97□□□□□ -1.93
SDC3O75056 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC3O75056 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC3O75056 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC2.97□□□□□ -1.93
SDC3O75056 AL391001.1-201ENST00000602747 715 ntBASIC2.97□□□□□ -1.93
SDC3O75056 BBIP1P1-201ENST00000602999 279 ntBASIC2.97□□□□□ -1.93
SDC3O75056 RPL12P50-201ENST00000603116 116 ntBASIC2.97□□□□□ -1.93
SDC3O75056 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC3O75056 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
SDC3O75056 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC3O75056 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC3O75056 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC3O75056 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
SDC3O75056 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 192.5 ms