Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC092125.1-201ENST00000562568 1995 ntBASIC3.32□□□□□ -1.88
LMX1BO60663 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.32□□□□□ -1.88
LMX1BO60663 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LMX1BO60663 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
LMX1BO60663 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LMX1BO60663 AC073073.2-201ENST00000609827 2578 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LMX1BO60663 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.31□□□□□ -1.88
LMX1BO60663 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
LMX1BO60663 ZNF285B-201ENST00000561698 1767 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.31□□□□□ -1.88
LMX1BO60663 AP004289.2-201ENST00000444413 1457 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.31□□□□□ -1.88
LMX1BO60663 FRG1BP-201ENST00000278882 761 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.31□□□□□ -1.88
LMX1BO60663 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LMX1BO60663 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.31□□□□□ -1.88
LMX1BO60663 SSXP10-201ENST00000402595 565 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 SNORA3.3-201ENST00000408712 125 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 RNU6-908P-201ENST00000410160 94 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 RNU2-41P-201ENST00000410991 178 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AL359704.1-201ENST00000411586 781 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 NUP35P2-201ENST00000416748 943 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.31□□□□□ -1.88
LMX1BO60663 AC012065.2-201ENST00000421295 375 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
LMX1BO60663 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.31□□□□□ -1.88
LMX1BO60663 AL035410.1-201ENST00000427409 427 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.31□□□□□ -1.88
LMX1BO60663 USP12PX-201ENST00000432383 1057 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 FCF1P1-201ENST00000432690 571 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 RPS15AP9-201ENST00000439856 381 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.31□□□□□ -1.88
LMX1BO60663 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.31□□□□□ -1.88
LMX1BO60663 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.31□□□□□ -1.88
LMX1BO60663 RNU6-420P-201ENST00000458780 107 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.31□□□□□ -1.88
LMX1BO60663 AC007182.2-201ENST00000489251 402 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC091951.2-201ENST00000500762 203 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 HMGB1P21-201ENST00000502313 581 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.31□□□□□ -1.88
LMX1BO60663 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.31□□□□□ -1.88
LMX1BO60663 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.31□□□□□ -1.88
LMX1BO60663 RNU1-95P-201ENST00000516357 160 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 RN7SKP83-201ENST00000516512 178 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 RNU1-128P-201ENST00000516704 160 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 RNU6-352P-201ENST00000516908 107 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC026403.1-201ENST00000518938 295 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 SUMO2P20-201ENST00000520803 283 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 MTND1P35-201ENST00000526739 508 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AP003497.1-201ENST00000528472 562 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.31□□□□□ -1.88
LMX1BO60663 AC104383.1-201ENST00000530297 370 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AP003034.1-201ENST00000534621 422 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC092470.1-201ENST00000546187 132 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.31□□□□□ -1.88
LMX1BO60663 AL512360.1-201ENST00000555346 234 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.31□□□□□ -1.88
LMX1BO60663 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.31□□□□□ -1.88
LMX1BO60663 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.31□□□□□ -1.88
LMX1BO60663 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.31□□□□□ -1.88
LMX1BO60663 C8orf59P2-201ENST00000603441 271 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AL137849.1-201ENST00000604767 169 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC012468.1-201ENST00000604888 430 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC007179.3-201ENST00000604976 235 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC008945.2-201ENST00000606056 604 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.31□□□□□ -1.88
LMX1BO60663 AC005344.1-201ENST00000613391 459 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC104260.1-201ENST00000616660 539 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 FP236240.3-201ENST00000623061 327 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC139792.3-201ENST00000623525 224 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC010149.2-201ENST00000637608 315 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 AC009093.8-201ENST00000641769 292 ntBASIC3.31□□□□□ -1.88
LMX1BO60663 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LMX1BO60663 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LMX1BO60663 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
LMX1BO60663 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.31□□□□□ -1.88
LMX1BO60663 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.31□□□□□ -1.88
LMX1BO60663 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.31□□□□□ -1.88
LMX1BO60663 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LMX1BO60663 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.31□□□□□ -1.88
LMX1BO60663 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LMX1BO60663 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
LMX1BO60663 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
LMX1BO60663 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LMX1BO60663 AC007529.1-201ENST00000418574 2178 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LMX1BO60663 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
LMX1BO60663 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LMX1BO60663 AL161781.1-201ENST00000354277 403 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 RNU6-1085P-201ENST00000363576 107 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 Y_RNA.234-201ENST00000364409 97 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 RNU6-169P-201ENST00000365336 107 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 RNU1-39P-201ENST00000383897 165 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 MIR199A2-201ENST00000385289 110 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
LMX1BO60663 AL356421.1-201ENST00000403255 413 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AC127391.1-201ENST00000411737 98 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 USP9YP27-201ENST00000418455 438 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AC019097.1-201ENST00000424783 735 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms