Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC012181.1-201ENST00000479895 423 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXC11O43248 AC068724.1-201ENST00000487100 792 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AC093534.1-201ENST00000504977 132 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC11O43248 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.77□□□□□ -1.81
HOXC11O43248 SUMO2P20-201ENST00000520803 283 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AC123904.3-201ENST00000547218 814 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
HOXC11O43248 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.77□□□□□ -1.81
HOXC11O43248 AC010591.1-201ENST00000603941 649 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AC007179.3-201ENST00000604976 235 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AC097065.2-201ENST00000608159 533 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXC11O43248 AC138749.5-201ENST00000611461 208 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AL158063.1-201ENST00000615349 536 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
HOXC11O43248 AC116165.2-201ENST00000616705 206 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC11O43248 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXC11O43248 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC11O43248 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
HOXC11O43248 AC005183.1-201ENST00000603687 1979 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC11O43248 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC11O43248 MTCO1P12-201ENST00000414273 1543 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXC11O43248 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
HOXC11O43248 RNA5SP72-201ENST00000364442 117 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 Y_RNA.333-201ENST00000365274 102 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 RNU1-39P-201ENST00000383897 165 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 HMGB3P23-201ENST00000414981 585 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 BX842559.1-201ENST00000419615 532 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXC11O43248 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXC11O43248 RPL17P49-201ENST00000443728 411 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXC11O43248 SSXP1-201ENST00000453640 473 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 BTF3L4P4-201ENST00000506381 449 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 AC010342.1-201ENST00000514047 877 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 SCARNA15.2-201ENST00000516409 127 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 Y_RNA.695-201ENST00000516715 107 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.76□□□□□ -1.81
HOXC11O43248 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXC11O43248 AC093012.1-202ENST00000549403 582 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXC11O43248 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXC11O43248 AC008962.1-201ENST00000605729 304 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 AC239868.4-201ENST00000608318 671 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 AC068831.7-201ENST00000616954 363 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 SNHG22-203ENST00000617833 660 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 MIR7975-201ENST00000619350 68 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 AC021755.1-201ENST00000559747 1447 ntBASIC3.76□□□□□ -1.81
HOXC11O43248 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC11O43248 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC11O43248 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC11O43248 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC11O43248 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC11O43248 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
HOXC11O43248 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 NCAPGP1-201ENST00000505112 1814 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXC11O43248 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXC11O43248 FGF7P2-201ENST00000332473 296 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 RNU1-18P-201ENST00000363062 164 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 SNORD116-9-201ENST00000384000 95 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 SNORD116-3-201ENST00000384287 95 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 SNORD116-7-201ENST00000384404 95 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 SNORD116-5-201ENST00000384462 95 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 RNU6-1197P-201ENST00000391183 107 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 SPA17P1-201ENST00000416656 452 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 AC245054.1-201ENST00000420944 258 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 NDUFB4P7-201ENST00000423198 363 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXC11O43248 ATP5HP2-201ENST00000433885 485 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 SETP8-201ENST00000435341 628 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 NDUFB4P6-201ENST00000436819 366 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXC11O43248 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXC11O43248 snoU109.1-201ENST00000459339 135 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 RN7SL93P-201ENST00000463035 293 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXC11O43248 MTND5P13-201ENST00000513046 1079 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 RNU6-64P-201ENST00000517119 105 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXC11O43248 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXC11O43248 AC124947.2-202ENST00000552735 133 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXC11O43248 PIGPP4-201ENST00000584447 307 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 AC012468.1-201ENST00000604888 430 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms