Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 OR4F13P-202ENST00000560066 2054 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC61Q9Y6R9 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC7.46□□□□□ -1.21
CCDC61Q9Y6R9 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC61Q9Y6R9 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC61Q9Y6R9 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC61Q9Y6R9 AC007529.1-201ENST00000418574 2178 ntBASIC7.46□□□□□ -1.21
CCDC61Q9Y6R9 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC7.46□□□□□ -1.21
CCDC61Q9Y6R9 AC144833.1-201ENST00000567953 4089 ntBASIC7.46□□□□□ -1.21
CCDC61Q9Y6R9 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC61Q9Y6R9 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 RNA5SP89-201ENST00000410300 108 ntBASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 EBAG9P1-201ENST00000418955 543 ntBASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 RPS15AP40-201ENST00000419621 391 ntBASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 AC093162.1-201ENST00000419682 124 ntBASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 AZGP1P2-201ENST00000454506 345 ntBASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 HMGB3P3-201ENST00000510526 400 ntBASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 YES1-203ENST00000577961 4554 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC7.46□□□□□ -1.22
CCDC61Q9Y6R9 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 AC007685.1-201ENST00000329806 452 ntBASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 Y_RNA.136-201ENST00000363444 102 ntBASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 SNORA20-201ENST00000384662 132 ntBASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 AC074290.1-201ENST00000448883 135 ntBASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 AC122688.1-201ENST00000541494 223 ntBASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 AC092470.1-201ENST00000546187 132 ntBASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC61Q9Y6R9 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 Y_RNA.182-201ENST00000363880 111 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 RNU1-59P-201ENST00000364829 162 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 RNU6-147P-201ENST00000383983 107 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 RNU2-2P-201ENST00000410396 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 RPL37P18-201ENST00000411602 243 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 AL353621.1-201ENST00000418219 243 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 AL772161.1-201ENST00000439130 476 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 RAC1P5-201ENST00000512182 576 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 RNU6-168P-201ENST00000516189 101 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 RNU6-659P-201ENST00000516454 104 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 AC090281.1-201ENST00000523019 276 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 ATP5F1P5-201ENST00000526403 760 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 AC024940.3-201ENST00000538551 316 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 AC008749.1-201ENST00000597650 306 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 AC025588.3-201ENST00000604182 274 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 AP000787.2-201ENST00000604432 568 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 RNU2-4P-201ENST00000606190 192 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.15-201ENST00000611544 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.16-201ENST00000613119 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.12-201ENST00000613778 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U1.25-201ENST00000614085 162 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.9-201ENST00000615427 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.11-201ENST00000616345 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.2-201ENST00000616535 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.3-201ENST00000617785 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.19-201ENST00000618602 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 RNU2-1-201ENST00000618664 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.6-201ENST00000619225 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.5-201ENST00000619465 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 U2.10-201ENST00000620268 191 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC7.44□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms