Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RNA5SP252-201ENST00000391131 119 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 RPS4XP3-201ENST00000398541 413 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AF274854.1-201ENST00000413236 615 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 RPL21P32-201ENST00000419877 477 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AC109583.1-201ENST00000432156 268 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 RPL7P54-201ENST00000438336 674 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AL118520.1-201ENST00000450770 291 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 AC104073.1-201ENST00000451988 151 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AL109741.2-201ENST00000455561 343 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 CABYRP1-201ENST00000465493 1045 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AC025181.1-201ENST00000477507 416 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AC104435.1-201ENST00000483483 166 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 LSM6P2-201ENST00000552208 177 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 NUTF2P8-201ENST00000604593 363 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 MIR1264-201ENST00000616374 69 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 AC098679.5-201ENST00000624394 571 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 AC093422.3-201ENST00000428506 305 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 UBE2V1P6-201ENST00000430840 422 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 ATP5F1P1-201ENST00000433775 569 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 SDR42E1P3-201ENST00000438345 502 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 AC004022.1-201ENST00000447766 1066 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 RPS20P24-201ENST00000457473 361 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 FAM92A1P2-202ENST00000504766 877 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 TTC39CP1-201ENST00000512513 755 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AK6P1-201ENST00000540219 478 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 AP001521.1-201ENST00000609150 300 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 FRG1HP-204ENST00000617940 757 ntBASIC2.68□□□□□ -1.98
USP42Q9H9J4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
USP42Q9H9J4 ZNF720P1-201ENST00000562403 1939 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.67□□□□□ -1.98
USP42Q9H9J4 MIR493-201ENST00000385254 89 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.67□□□□□ -1.98
USP42Q9H9J4 TMEM167AP1-201ENST00000423409 219 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.67□□□□□ -1.98
USP42Q9H9J4 AC009237.8-201ENST00000445492 379 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 RSL24D1P2-201ENST00000445584 366 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 RPL23AP20-201ENST00000447965 421 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 AL590664.1-201ENST00000448065 339 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 PRELID3BP4-201ENST00000515476 571 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.67□□□□□ -1.98
USP42Q9H9J4 AP000790.1-201ENST00000528891 737 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 BNIP3P4-201ENST00000604946 565 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 CU459211.1-201ENST00000635667 749 ntBASIC2.67□□□□□ -1.98
USP42Q9H9J4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
USP42Q9H9J4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.66□□□□□ -1.98
USP42Q9H9J4 MTND5P31-201ENST00000419366 1374 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
USP42Q9H9J4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
USP42Q9H9J4 SNORD82-201ENST00000365530 70 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
USP42Q9H9J4 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
USP42Q9H9J4 AL139156.1-201ENST00000412785 841 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 RPS6P14-201ENST00000425165 719 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC2.66□□□□□ -1.98
USP42Q9H9J4 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.66□□□□□ -1.98
USP42Q9H9J4 AC092170.1-201ENST00000440211 356 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 UBBP3-201ENST00000445497 241 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 GZMAP1-201ENST00000503054 631 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 AC098799.2-201ENST00000509466 868 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.66□□□□□ -1.98
USP42Q9H9J4 SETP2-201ENST00000553886 926 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.66□□□□□ -1.98
USP42Q9H9J4 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC2.66□□□□□ -1.98
USP42Q9H9J4 AC012669.1-201ENST00000603209 283 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 AC007275.1-201ENST00000621243 671 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 MTND5P11-201ENST00000511037 1812 ntBASIC2.66□□□□□ -1.98
USP42Q9H9J4 AC025263.3-201ENST00000622965 1396 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 Y_RNA.164-201ENST00000363709 102 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 RN7SKP226-201ENST00000364912 300 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 RNU6-921P-201ENST00000384361 107 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 RPL21P75-201ENST00000396599 483 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 RPL21P28-201ENST00000401418 483 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 AL592114.1-201ENST00000403842 483 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 STAT4-203ENST00000409995 709 ntTSL 5 BASIC2.65□□□□□ -1.99
USP42Q9H9J4 Y_RNA.595-201ENST00000410403 105 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.65□□□□□ -1.99
USP42Q9H9J4 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.65□□□□□ -1.99
USP42Q9H9J4 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC2.65□□□□□ -1.99
USP42Q9H9J4 AC012497.1-201ENST00000429392 575 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.65□□□□□ -1.99
USP42Q9H9J4 AC129850.1-201ENST00000436203 508 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 AL591719.1-201ENST00000444669 744 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 Z96811.1-201ENST00000445880 108 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 RPL21P39-201ENST00000463605 483 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 AC011979.1-201ENST00000472300 483 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 RPL21P93-201ENST00000480465 489 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 AC233702.1-201ENST00000482905 502 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 AC093591.1-201ENST00000491435 481 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms