Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 HSPE1P23-201ENST00000509838 286 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC034159.1-201ENST00000513885 583 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 RNU6-232P-201ENST00000517144 64 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 CR383656.7-201ENST00000548164 174 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC090616.2-202ENST00000584248 222 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC007687.1-201ENST00000602704 304 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC090186.1-201ENST00000605991 572 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC103710.4-201ENST00000609301 899 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC122133.1-201ENST00000613964 233 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 U7.8-201ENST00000619968 63 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC019226.2-201ENST00000625973 424 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 AC243829.7-201ENST00000633081 225 ntBASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
ZNF541Q9H0D2 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 RNU6-600P-201ENST00000362524 99 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 RNU6-97P-201ENST00000363387 104 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 RNU5F-7P-201ENST00000363696 115 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 RNU6-629P-201ENST00000384061 103 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 MTND2P18-201ENST00000419962 1030 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AC019097.1-201ENST00000424783 735 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AL121871.1-201ENST00000443413 436 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AL606662.1-201ENST00000445763 553 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 OR6C5P-201ENST00000452388 923 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AC234775.1-201ENST00000454247 670 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 BET1P1-201ENST00000482276 359 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AP001025.2-201ENST00000490908 477 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 NIPA2P2-201ENST00000496376 1083 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 MLLT10P2-201ENST00000506434 249 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 RNU4-29P-201ENST00000515943 174 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 SNORA31.20-201ENST00000517111 133 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 RNU6-1073P-201ENST00000517182 106 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AC109635.4-202ENST00000531666 412 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AL357094.1-201ENST00000603845 844 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AC024560.3-201ENST00000608482 349 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AL603755.1-201ENST00000619504 163 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 AC091931.1-201ENST00000623488 728 ntBASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.63□□□□□ -1.83
ZNF541Q9H0D2 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL391994.1-201ENST00000254724 282 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 Y_RNA.302-201ENST00000364997 102 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 RNU6-1074P-201ENST00000383995 104 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 RNU4-72P-201ENST00000410754 173 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 VPS26BP1-201ENST00000417155 755 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AC127526.1-201ENST00000417526 366 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL137014.1-201ENST00000420490 1226 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 RPL21P40-201ENST00000428586 483 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AC087499.2-201ENST00000432861 149 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL590103.1-201ENST00000434488 307 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 NPM1P49-201ENST00000448027 714 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AL445669.2-201ENST00000454425 421 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 SNORD109B-201ENST00000458961 67 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 SNORD109A-201ENST00000459128 67 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 HMGB1P25-201ENST00000468402 607 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AC092451.1-201ENST00000480211 153 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 AC005921.1-201ENST00000510589 286 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 IGKV2D-23-201ENST00000518179 286 ntBASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF541Q9H0D2 OSBPL9P5-201ENST00000542581 171 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms