Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MTND1P37-201ENST00000636562 264 ntBASIC4.34□□□□□ -1.71
CHMP4AQ9BY43 PCF11-AS1-201ENST00000602322 1516 ntBASIC4.34□□□□□ -1.71
CHMP4AQ9BY43 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CHMP4AQ9BY43 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.34□□□□□ -1.72
CHMP4AQ9BY43 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AL513302.2-201ENST00000562313 1842 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AL672167.1-206ENST00000356293 943 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 RNU6-853P-201ENST00000364306 107 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AL136116.1-201ENST00000403591 381 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 RN7SKP140-201ENST00000411196 284 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC017079.2-201ENST00000416102 485 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 OR2B8P-201ENST00000432841 938 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 COX7BP2-201ENST00000437976 242 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 FGF7P5-201ENST00000441829 291 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AL160314.1-201ENST00000490836 438 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC034159.1-201ENST00000513885 583 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC128657.1-201ENST00000549459 145 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC010653.1-201ENST00000571108 881 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC015917.1-201ENST00000579654 510 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 MIR4276-201ENST00000584832 70 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC072039.2-201ENST00000608883 439 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 AC099063.3-201ENST00000642066 185 ntBASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.33□□□□□ -1.72
CHMP4AQ9BY43 CR848007.1-201ENST00000442354 1699 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 RNY4P24-201ENST00000362735 96 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 SNORA4.1-201ENST00000364263 144 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 Y_RNA.548-201ENST00000384656 105 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 RNU4-47P-201ENST00000410876 114 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 RNA5SP492-201ENST00000411330 114 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC126124.2-201ENST00000413542 321 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 HSFY4P-201ENST00000415994 1181 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AL513477.1-202ENST00000417061 214 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC006028.1-201ENST00000438379 402 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 RPL27AP5-201ENST00000469428 449 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC135721.1-201ENST00000497954 479 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC114786.4-201ENST00000508771 728 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC114797.1-201ENST00000514003 728 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 FABP5P12-201ENST00000515543 389 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC022634.1-201ENST00000520765 532 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 MTND1P8-201ENST00000571424 950 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AF038458.1-201ENST00000588406 262 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AL606834.2-201ENST00000602954 668 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AL357094.1-201ENST00000603845 844 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 AC007179.3-201ENST00000604976 235 ntBASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
CHMP4AQ9BY43 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 AC073346.2-201ENST00000624724 2058 ntBASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 DYNLT3P1-201ENST00000378574 347 ntBASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 RNA5SP120-201ENST00000410900 112 ntBASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 RNU2-25P-201ENST00000411041 191 ntBASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 EEF1E1P1-201ENST00000446998 430 ntBASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 AP000542.1-201ENST00000448473 371 ntBASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 snoU13.22-201ENST00000459428 104 ntBASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC4.31□□□□□ -1.72
CHMP4AQ9BY43 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms