Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SNORA26.8-201ENST00000391306 124 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AL591034.1-201ENST00000407447 340 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.37□□□□□ -1.87
USP28Q96RU2 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 SDCBPP3-201ENST00000419629 891 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 SEPT2P1-201ENST00000419651 180 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.37□□□□□ -1.87
USP28Q96RU2 BX119904.4-201ENST00000424402 301 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.37□□□□□ -1.87
USP28Q96RU2 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.37□□□□□ -1.87
USP28Q96RU2 MTCO2P16-201ENST00000436962 677 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 KATNBL1P3-201ENST00000443475 909 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AP000936.2-201ENST00000447151 681 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 MTND2P19-201ENST00000449129 1012 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AL162389.1-201ENST00000449233 177 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 KATNBL1P6-201ENST00000453433 915 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 MTCO3P11-201ENST00000455103 774 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AC082651.2-201ENST00000496833 166 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.37□□□□□ -1.87
USP28Q96RU2 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USP28Q96RU2 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.37□□□□□ -1.87
USP28Q96RU2 MTND4LP22-201ENST00000508209 276 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.37□□□□□ -1.87
USP28Q96RU2 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.37□□□□□ -1.87
USP28Q96RU2 MTND5P13-201ENST00000513046 1079 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.37□□□□□ -1.87
USP28Q96RU2 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.37□□□□□ -1.87
USP28Q96RU2 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.37□□□□□ -1.87
USP28Q96RU2 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.37□□□□□ -1.87
USP28Q96RU2 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 MIR4429-201ENST00000580105 73 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.37□□□□□ -1.87
USP28Q96RU2 AC012119.1-201ENST00000603184 222 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AC015871.2-201ENST00000603605 948 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AC073114.1-201ENST00000612027 490 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AL020991.1-201ENST00000612314 373 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AC018755.4-201ENST00000619715 454 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 Z69908.1-201ENST00000622603 247 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AL356596.1-201ENST00000624230 379 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.37□□□□□ -1.87
USP28Q96RU2 U6.101-201ENST00000637707 76 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AC068137.4-201ENST00000638485 296 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AC099063.3-201ENST00000642066 185 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
USP28Q96RU2 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USP28Q96RU2 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP28Q96RU2 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.36□□□□□ -1.87
USP28Q96RU2 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP28Q96RU2 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
USP28Q96RU2 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP28Q96RU2 RNU1-35P-201ENST00000362782 153 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 SNORA51.4-201ENST00000364993 124 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 MIR670-201ENST00000390142 98 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 RN7SKP58-201ENST00000411010 305 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AL133384.1-201ENST00000412744 351 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AC109780.2-201ENST00000413467 845 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 BTF3L4P1-201ENST00000413813 468 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.36□□□□□ -1.87
USP28Q96RU2 RPL7P30-201ENST00000420888 709 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AL035407.1-201ENST00000429211 571 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AL589823.1-201ENST00000429577 183 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 ZYG11AP1-201ENST00000430329 837 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 RPL17P49-201ENST00000443728 411 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 VN1R34P-201ENST00000447387 883 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 EPS15P1-201ENST00000448836 336 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.36□□□□□ -1.87
USP28Q96RU2 TRBV26-201ENST00000456572 344 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.36□□□□□ -1.87
USP28Q96RU2 HMGN2P13-201ENST00000476476 274 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AC017015.1-201ENST00000477387 286 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 OR2A20P-203ENST00000498397 1268 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 OR5H5P-201ENST00000503164 928 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 KLRA1P-201ENST00000503499 986 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.36□□□□□ -1.87
USP28Q96RU2 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.36□□□□□ -1.87
USP28Q96RU2 AC074250.1-201ENST00000511117 192 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.36□□□□□ -1.87
USP28Q96RU2 OR5G4P-201ENST00000525251 760 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP28Q96RU2 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.36□□□□□ -1.87
USP28Q96RU2 AC135279.1-201ENST00000543493 504 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.36□□□□□ -1.87
USP28Q96RU2 AC007954.1-201ENST00000554198 494 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AL590229.1-201ENST00000603497 542 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AL596327.1-201ENST00000603629 213 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 DUXAP11-201ENST00000603858 526 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AC128687.1-201ENST00000605304 619 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.36□□□□□ -1.87
USP28Q96RU2 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
USP28Q96RU2 AC110774.1-201ENST00000623567 2018 ntBASIC3.36□□□□□ -1.87
USP28Q96RU2 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.35□□□□□ -1.87
USP28Q96RU2 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
USP28Q96RU2 Y_RNA.51-201ENST00000362725 102 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 RNU6-761P-201ENST00000384148 107 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 RNU1-101P-201ENST00000391171 127 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.35□□□□□ -1.87
USP28Q96RU2 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.35□□□□□ -1.87
USP28Q96RU2 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms